G159790


Basic Information

Item Value
gene id G159790
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 21146273 ~ 21206671 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216566
cacacacacacacacacacacacacacacacgtgtacaCACGCCACGCACACGCACGCaagcgcgcgcacacacaaacacacgcacgcacgcggaggagacctgctgctgctgctcctgctcctCGCCGCAGCCCCCGTGTCCCCCGTGCTCCGTCACCCGTCAGTGAGCGGCGGACGTATCTGCTCCGCTCTGTCCGGTCACTGGCTGTTGGGCTCCGCGCGCTGTGCCGCTCATCTCAGCAGCTCGTGCGCTGAACAGAGACGCGCGAGAGAGGAGGAATGACGGGGAAATGACGAACAGAGCTGCGGGTTTTGTTTTCACGCGGCATATttccccctgtctctccctctgtctctgtctcgcGCTGTGTCCGGTCCCCCCTCCTCTCCGGATGGTTTTCTCCGGAGTCTCGAAGCCGCGGAGAGTCTCGCGGTGATTCTCGCAGCGCGTGAAGCTCCTCGCGCGCGGCCGGCCAGCCTGAGGGAAACGGACACCGCGAACTCCTGCTTCAGAGCCGTCCGTCTGCTGCTCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216566 True 536 lncRNA 0.65 2 21146273 21206671

Neighbor

gene id symbol gene type direction distance location
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding upstream 138983 20986624 ~ 21007290 (+)
lysmd4 NA coding upstream 394477 20745568 ~ 20751796 (+)
arrdc4 NA coding upstream 472046 20666244 ~ 20674227 (+)
LOC103025942 NA coding upstream 1298715 19775339 ~ 19847558 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding upstream 1374146 19666624 ~ 19772127 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding downstream 45033 21251704 ~ 21255960 (+)
LOC103034933 LOC108431189,LOC101061116 coding downstream 148448 21355119 ~ 21371584 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding downstream 250685 21457356 ~ 21461379 (+)
LOC103031832 NA coding downstream 425089 21631760 ~ 21699721 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding downstream 793989 22000660 ~ 22061810 (+)
G159781 slco3a1,LOC107690372,LOC107601651,LOC107715617,LOC107693030 non-coding upstream 20177 21089743 ~ 21126096 (+)
G159778 NA non-coding upstream 64944 21080716 ~ 21081329 (+)
G159777 NA non-coding upstream 68848 21077219 ~ 21077425 (+)
G159744 NA non-coding upstream 248735 20897151 ~ 20897538 (+)
G159739 NA non-coding upstream 295342 20850354 ~ 20850931 (+)
G159836 NA non-coding downstream 229178 21435849 ~ 21443252 (+)
G159864 NA non-coding downstream 284718 21491389 ~ 21491751 (+)
G159868 NA non-coding downstream 301924 21508595 ~ 21508833 (+)
G159891 NA non-coding downstream 545834 21752505 ~ 21752999 (+)
G159896 NA non-coding downstream 640946 21847617 ~ 21850541 (+)
fam174b NA other upstream 71700 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 134479 21009302 ~ 21011794 (+)
G159728 NA other upstream 409224 20736598 ~ 20737049 (+)
G159666 NA other upstream 959354 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 2569836 18525528 ~ 18576437 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 941173 22147844 ~ 22152785 (+)
G160134 NA other downstream 1646741 22853412 ~ 22854081 (+)
G160306 NA other downstream 2912458 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 5117149 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 5410591 26617262 ~ 26755313 (+)

Expression


Co-expression Network