cfdp1 (LOC105419833)


Basic Information

Item Value
gene id cfdp1
gene name LOC105419833
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19076082 ~ 19111677 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256215.3
TCTCTATACAGGCTCTCTGTCCATGCCTTGTGTGAAACAGGCTGGCTAGCTGAACAGCTACAcatttgttgtgtttgtggcggttcttctctctctccagcaggAAATGATGAATTATTCGGACTATGACTCGGATGACTATTCCTCAAATGAAGATGAAGACTATGTTCCCTCTGATGACAACCTGAGCGAAGATGACATTAATGAATGTGTGAAGGAAGATGGCTTGGATGAAGAGGACCAAAATGAACCACGGCCTGACAATGCGAAGAAGAAAAAGTTAAAGAAGTCAAGTAAAGATCTTTCTGTGAGaaaaagaaaaaaaggaggacTTAAGCTGGAAGGAGGTGATGAGGGTGGCACAGATGAACAGAAGGAAGATGAAGGACAAGCGAAAGAGGAGGAGTCTGTACCAAAGTCAGTGGAAAAAcatgaagagaagaagaaacaaaaagcagatgATCTTTGGGCAAGTTTTTTAAAGGATGTTGGCCCAAGACCCAAAGCTCAGACACCTGCCTCTCAACAGACTACAGCTGATTCCACACCACAAGAAGCCAGTAAAACCACCACAGATCCTCCGCAGGAAGAACCAAAATCCAAAAAGCCCTCCACAGTCACAATAACAAAGGTTTTTGACTTTGCAGGAGAAGAAGTCCGGGTCACTAAAGAGGTGGCTTCTGATTCACGAGAGGCAAAAAGTTTCCTGAAACAGGAAGAGAAGCAGGAGCAGCCAATGTCTCCCTCTAAAGCCCCTTCATCACTCATTCCTGGACCCAGTGTGAAGAGGCCAGCAGGGATGGGCAGCATCCTGAACCGTATTGGATCCAAGAAGCAGAAGATGAGCACGCTGGAAAAGTCCAAGCTGGACTGGGATAGCTTCAAAACAGAAGAGGGCATCGGCGATGAGCTGGCCATCCACAACCGAGGAAAAGAAGGGTACGTGGAGAGGAAAAACTTTCTGGAGAGAGTGGATCAGCGGCAGTTTGAGCTGGAGAAGAACGTGCGTCTGAGCAACATGAAAAGATGACTGGAGAATTCACAGGGTGGATCAGGTCACACATGGACtttatacactcacacacactcacacacacacacaaacacacacacacacacatattcactcACTTTGTGCTGCAAGTCACTATTTGACTCTGTTGGCCGTCTCCTTGATTGGCAGTTCTCACACCTCCCGCTCCACAAGAGCTGCCCACTCATCCGTGGATGGAGCCAATTGAGATTCATATGGTCTTACCCTGTGTTGTGTATCCACTTCTGCTGACCTGACCTGTGTAAGAATGGAATCTGCTAAAACTCACTCGTGTCACTCAGAAACTGGATTCAGAAAGAACACAACAATCCAGAGAAATACAGGAACATTTACAGATCtctaaagcatttatttgttttatttcagaaaatgtaATTGTATATCATGGTATATCATTGtatatcagtgcagtgtttctcaGGCCAGTTTGCAAGTTAGAGAGGTTTTATCTACATTATTCTGTTTCCAAATACGGTTCCAGAACAATTTCAGCCCCAGCTCATGCTTGACCTGCTCTAACATGATTCTATTTTTCTCAGTCTAAGGAACCCTGTGTACTGCACTTGCAGTTTGATGCATGTTCTGTGCTCTTGCACACCTGGTTTAACTCATAATATAACTACTATGCTCTTGAAGAACTCAGTTTGGTGTGTTGAAGCAGGGAAATTCCAAAACCATTAGCAGAACATGGGATTTCTAAGTGGAGGACTGGCATCCATTGCTTGTAGGGAATTTTTACTCCAAGTACAAGAAGACAAACATCAGGGGTGTTCTCAGAATAGAAGAATAAGGGTGTGTagttgtttgtctctctgtttgtgCTATTTCTCCTTTGAGATTTTGCGCCGTTAAGATTGATTGTATGATAATTACGTCTCTCGCcccataaacattttttttttctttaccctTTGACTTGAATAAATCAAATCATTTGGTTtggtctttttttaaaata

Function

NR:

description
craniofacial development protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256215.3 True 2012 mRNA 0.43 7 19076082 19111677

Neighbor

gene id symbol gene type direction distance location
carmil2 carmil2,LOC107694932,LOC107733559 coding upstream 10926 18997053 ~ 19065156 (+)
ctcf ctcf,LOC107726208,LOC107583725,LOC107596920 coding upstream 84371 18983602 ~ 18991711 (+)
ripor1 fam65a coding upstream 95090 18878135 ~ 18980992 (+)
ranbp10 ranbp10,LOC107583731,LOC107733562 coding upstream 262754 18762685 ~ 18813328 (+)
LOC111194773 LOC106934266,LOC108233135 coding upstream 575263 18496094 ~ 18500819 (+)
bcar1 bcar1,LOC107596915,LOC107583722,LOC107701029 coding downstream 11242 19122919 ~ 19236859 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding downstream 141680 19253357 ~ 19258034 (+)
gnao1 gnao1,gnao1a,LOC108264367,LOC107715606,LOC107660763,LOC102196435,LOC100693875,LOC108249535 coding downstream 205696 19317373 ~ 19433125 (+)
cbfb cbfb,LOC107715607,LOC107715210 coding downstream 340098 19451775 ~ 19496575 (+)
fan1 NA coding downstream 388346 19500023 ~ 19512225 (+)
G159398 NA non-coding upstream 266012 18786541 ~ 18810070 (+)
G159389 nutf2 non-coding upstream 323928 18738284 ~ 18752154 (+)
G159388 NA non-coding upstream 339409 18736402 ~ 18736673 (+)
G159365 edc4 non-coding upstream 341268 18732483 ~ 18734814 (+)
G159363 NA non-coding upstream 348045 18727015 ~ 18728037 (+)
G159480 NA non-coding downstream 147619 19259296 ~ 19262326 (+)
G159579 NA non-coding downstream 452072 19563749 ~ 19563966 (+)
G159583 NA non-coding downstream 473731 19585408 ~ 19585837 (+)
G159585 NA non-coding downstream 474771 19586448 ~ 19586972 (+)
LOC103038177 NA non-coding downstream 495739 19607416 ~ 19665139 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 499645 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 1090178 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 1703876 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 1886831 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 1903854 17101612 ~ 17172228 (+)
G159666 NA other downstream 1073839 20185516 ~ 20186919 (+)
G159728 NA other downstream 1624921 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 1897625 21009302 ~ 21011794 (+)
fam174b NA other downstream 1948979 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 3036167 22147844 ~ 22152785 (+)

Expression


Co-expression Network