LOC103044051 (LOC108434085,LOC108264118,LOC108434032)


Basic Information

Item Value
gene id LOC103044051
gene name LOC108434085,LOC108264118,LOC108434032
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28180682 ~ 28184907 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679803.1
AGAACAATGCTGAAAGGAGAAACAACTAATGCCATTGGTTCGCATCTGTCGTTGGAAAAATTCAAGGCCATCCCCTGTTCATTCTTGTCCTTTATATGCCAATGTGTGCTTTACTACCAATGTGTGGCAGGTATGGCACACCATGCAATTGTGTTCACATGCTGGTTTCTGCTTATTGTGCCTATGTTGTGTCAGTTCATAAACAATCATCAGTGTATCTATCAGGGGGAAGAAAGGAATCAAAATTTCTACCAGGATGGAGATGTAATTGTGGGCGGATTGTTCCCTCTGCACTACACCCCGGTGACAACAGTGTGGTCTTTCCAAAAGAAGCCTGCTCCCACTGAGTACAAATACTTAAATCCACGAGCTCTCAGATGGATGAGCACTATGACCTTTGCTGTGATGGAGATAAACCAGAGAAAAGACCTGTTACCAAACCTGACTCTGGGCTATCACATTCGGGACAGTTCTGATGATATTCCTACGTCTTTGAAAGGGTCACTGCTCCTGGTGAATGGGCAGCCGGACATGAGACAAGGATCCAGCTGTGCAGAAGTACGCAGACAGCCCTCTCCAGTCATTGTGGGAGATGCAGCATCAGGGGTTTCCATGGCTGTGCTGAGAACACTGGGCTCATTCAGTGTGCCTTTGGTGAGTTACTTTGCATCCTGCTCTTGTCTGAGTAACAAGAAAGAGTTTCCTGCATTTATGAGGACGATGCCAAGCGATGAGTTTCAGATTAAAGCCTTAGCAAAGCTGGTCCATTATTACCAGTGGACTTGGGTGGGAGTCATAGGTGTGGAATCGGACTATGCTCGCTTTGCTGTTCAGCTCTTTCTAAAGGAATCAGTCAGATATGATGTGTGCATTGCATATGTGCACTTCTACCCTGTTACTCTGTCCAGAGAAGCACTAAGAGAGCTGTTGGGCATTATTGAGGCCTCTACTGCCACAGTCATACTTAGTTTCTCTGGGGAATTGGAGCTGCAGACCATCCTGAAAGAGTGCAGACGACAAAACATCACCCATCTGCAGTGGATCGCCAGTGAAGCCTGGGCCACTGCAAAGACACTGTGGAGTGATTTCAGTGATATGTTGCAGGGAACGCTGGGATTTGCCATTAGGAAAGCAGAAATCCCAAATCTATACAGCTACCTCAGAGAGCTGAACACCTCCAGTCTtcatgtttctagtttcttagGTGAGTTTTGGGAGGAAACATTCAACTGCCGGATCAATGGGTCTCTAAACACCCATATACACAAAGAAGATGTAAAAAACAGAGGGCCTTGCAGTGGAGAAGAGAGTCTGGATGATGTGTACAATCCCTACACAGATGTGACCCAGCTTAGAGTCAGCTACAATGTGTACAAGGCTGTGTATGTAATAGCTCATGCCTTGCATGATATGAGCACATGTGTTCCCGGAGAGGGCCCTTTTCAGAATGGGACGTGTGGCAGCCTGAATCCCATTCTGCCATGGCAGCTTCTGCGCTACATGAAACGAACAAGCTTCACAACGCTGGGAGAAGATGTCCGCTTTGATGAGAATGGGGACCCTATCGCCTCTTATGATCTGATGAACTGGCAGGTGGCAGAAGATGGCTCTCTTTTGCTGGTCAAGGTGGGGTTCTTTGATGCCTCACTAGAGGAGGACAAAGACCTGGTCATTAATGAATCGATGATTATGTGGCACAGAGGAGACAAGGCACCAGAATCTGTCTGCAGCAAAAGTTGCCTGCCAGGCTCCAGGAAAGCCAGGCGAAAGGGTGAACCCATATGCTGCTTTGACTGCATACCGTGTGGCGAGGGAGAGATTAGCAATCAAACAGACTCAATTGACTGTTTGAGATGTTCAAAGGAGACGTGGCCGAACCAAGCCAGAGACCAGTGCATGCCAAAGACCCTGGAGTATCTGTCCTTTCAGGAGCCCCTGGGAATAGTTCTCTGGGCTGTTTCAACCTTTGGAGCATTTTTAACTGCAACGGTACTTTTCGTGTTCGTGATCTACAGGAAGACCCCCGTCATCAGAGGAAACAACATGGAACTCAGCTTCCTGCTTCTCCTGTTCCTCTGTGCGTGTTTTCTGATTGGTCTGACATTCATTGGGAAGCCCTCTAACTGGCTCTGCCAAATCAGATACACAGCCTTTGGAATCAGTTTTGCTCTTTGTATCGCCTGCATCTTGGCTAAGACAGTAGTGGTTCTGATGGCTTTCAGGGCCACCCTTCCTGGCAGCAATGTCATGAAGTGGTTTGGTCCAGCCCAACAGAGGCTAAGCGTCATACTGTGCTCTTGTGTTCAAGCACTGATCTGCATCATATGGCTAACCACTAAACCTCCTTCTGCTGCCTATAACACTGAGTTTATGAGTGCTACTATAATTGTTGAGTGTAATGTGGGGTCTGAGCTAGGATTCTGGTGTGTGTTGGGATACATTGGCCTTCTGGCTTGCATGTGCTTTTTAATAGCTTTCTTCGCCAGGAAGCTCCCTGATAATTACAATGAAGCAAAATTCATTACATTTAGCATACTCATCTTTTTTGCTGTGTGGATAACTTTCATCCCGGTATATGTGAGCACTCGTGGAAAGTATATGGTTGCTGTGCATGTGTTTGCCATCTTAGCATCTGCTTTTGGTCTCCTTTTGTGTATATTTGCTCCAAAATGCTACATTGTGCTGCTGAGACctgataaaaacagcaaaaaacatatgatgaaaaaatagatatattgtGCTGGACCCCTACtttctttatataaaaataaacataaaattgtTAAATTCTTATGCAGTGTAAAAATTGATTGCAATAAAAATGATCCTTTAAAGGTTTGGTCTGTCCTTTCAAAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679803.1 True 2856 mRNA 0.46 6 28180682 28184907

Neighbor

gene id symbol gene type direction distance location
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding upstream 2696 28173610 ~ 28177986 (+)
LOC103045576 LOC108437981,LOC108264123 coding upstream 102950 28071491 ~ 28077732 (+)
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding upstream 203000 27969058 ~ 27977682 (+)
plch1 plch1 coding upstream 214992 27805063 ~ 27965690 (+)
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding upstream 402216 27762391 ~ 27778466 (+)
LOC111194790 LOC108434085,LOC108264118,LOC108434032 coding downstream 843 28185750 ~ 28195714 (+)
gpr149 gpr149 coding downstream 71065 28255972 ~ 28283318 (+)
dhx36 dhx36 coding downstream 115812 28300719 ~ 28386417 (+)
arid3b LOC108439030,LOC108264089 coding downstream 583699 28768606 ~ 28859096 (+)
LOC103037946 LOC108439022 coding downstream 769810 28954717 ~ 28969395 (+)
LOC111194734 NA non-coding upstream 145487 28030613 ~ 28035195 (+)
G161129 NA non-coding upstream 287205 27893087 ~ 27893477 (+)
G161115 NA non-coding upstream 397493 27780854 ~ 27783189 (+)
G161080 NA non-coding upstream 553260 27602859 ~ 27627422 (+)
G161079 NA non-coding upstream 593912 27586529 ~ 27586770 (+)
G161243 NA non-coding downstream 181261 28366168 ~ 28394028 (+)
LOC111194802 NA non-coding downstream 458414 28643321 ~ 28652309 (+)
LOC111194803 NA non-coding downstream 467645 28652552 ~ 29213664 (+)
G161302 NA non-coding downstream 483266 28668173 ~ 28764043 (+)
G161314 NA non-coding downstream 701535 28886442 ~ 28886800 (+)
c18h3orf33 NA other upstream 384178 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 1061418 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 1273055 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 1425369 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1835000 26323820 ~ 26345682 (+)
G161292 rap2b,LOC107757383 other downstream 437221 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 560789 28745696 ~ 28759007 (+)
G161331 NA other downstream 885913 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 2168779 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 2669651 30854558 ~ 30894506 (+)

Expression


Co-expression Network