LOC103039001 (caspase-3,LOC108441697,LOC103370277)


Basic Information

Item Value
gene id LOC103039001
gene name caspase-3,LOC108441697,LOC103370277
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3395119 ~ 3454586 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU247050
TGCCTCAGCTTCGCTTTAAGACAATTCACGAACCAATCGAGACCGAGCTGATTCAGGTTTACTGGGGAGCACCAGTCCTTCCAGACTTCACTTTGAGGAACACTGCCTTAGACCACCAATCATACGTGACCTCGAGTGACCCTTACTGAGCCATTCTGAGTCTGTTGATCTTGTTCATATGGTTTGATTAGATAAAATATGTGGTATTTTGATTGACAGCCATGTGAGGTCTGATGCTGCGCTCCATTTACCTCAGAGTTGAACCTTTAGATATATACGCTATCACTGTTAGCGTCGTTAGCGATATCTGTCGATAGCAGTGCATTATGTGGTATTTTGCACTTCTAAACAACatgaacacatttaaacatatagaAGTTAGTACAAGATAGTACAGTGTGTATAACTGAGTTAATGAGACACCAACAGACTTCTGTTGAGTAACTCAGGATTGGTGAGGTTCCCGACGTTCCTAGTGGAAAATCCGACTTGCAGGAGCATTCCAGTTACGATTTCCCAATTAGAACCAGGAAATTCTAATTTCTGAGTCCAAATAGAACGCAGCATGAGTCCTAACTGTTGCCGGATGATACCAGCAGCCCTTGTCATCATGTACAATAGTGTTTTGCTTTGGTTTCTTGAAGATGTTCTTGCACTGCCTTTTACTCGATCCCTTTTACACAATTCCTCTGTAtttcaacaataaataaatggcaTTATGTTTTGGCA
>TU247051
TGCCTCAGCTTCGCTTTAAGACAATTCACGAACCAATCGAGACCGAGCTGATTCAGGTTTACTGGGGAGCACCAGTCCTTCCAGACTTCACTTTGAGGAACACTGCCTTAGACCACCAATCATACGTGACCTCGAGTGACCCTTACTGAGCCATTCTGAGTCTGTTGATCTTGTTCATATGGTTTGATTAGATAAAATATGTGGTATTTTGATTGACAGCCATGTGAGGTCTGATGCTGCGCTCCATTTACCTCAGAGTTGAACCTTTAGATATATACGCTATCACTGTTAGCGTCGTTAGCGATATCTGTCGATAGCAGTGCATTATGTGGTATTTTGCACTTCTAAACAACatgaacacatttaaacatatagaAGTTAGTACAAGATAGTACAGTGTGTATAACTGAGTTAATGAGACACCAACAGACTTCTGTTGAGTAACTCAGGATTGGTGAGGTTCCCGACGTTCCTAGTGGAAAATCCGACTTGCAGGAGCATTCCAGTTACGATTTCCCAATTAGAACCAGGAAATTCTAATTTCTGAGTCCAAATAGAACGCAGCATGAGTCCTAACTGTTGCCGGATGATACCAGCAGCCCTTGTCATCATGTACAATAGTGTTTTGCTTTGGTTTCTTGAAGATGTTCTTGCACTGCCTTTTACTCGATCCCTTTTACACAATTCCTCTGTAtttcaacaataaataaatggcaTTATGTTTTGGCAACATTAAaaaaaaaaaaaaaaa
>XR_002651509.1
GTTAGATTTCCGCAGAAGCTGCTCGGTTCCGCTGCCTTTCTCCAGCCGGACCGGTTCGGGTGTAAAATCTCTGATAGGCTGCTCgcgcaaacaaagaaaacataccGGACATGTGCGAACAGTGAACAGCCTGAGGatttaaatcatattaaagAAACTGCAGCGTTCCCGCGGCCCTGTTTCTGCACATCTTTAACATCTTATCTGTGAGAAAATCCTCTTTTAATCATCATGTCTGAGAACGCGGAGAACAAGCAGGCAGCGAACGGAGACGCCGTGGACGCGCGACAGGCAGACGCTCCAGATGCTGGTACGGCTGGGGCTGGAGGAGGGGAGCAAACGCAGGTGGACGCGAAGGGCCACGCCCACAGCTTCAGATACAGCCTGAACTACCCTAGCATCGGACACTGcatcatcatcaacaacaaGAACTTCCACAGGAGTACCGGCATGAATCAGCGTAACGGTACGGACGTTGACGCTGGCAATGCCATGAAAGCATTTGGAAAGTTGGGCTACAAGGTGAAGGTGTTCAACGACCAGACTGTGGATCAGATTAAGCAGGTTTTAACTGCAGTTGCCAGGGAGGACCACAGCCGCTGTGCAtcactggtgtgtgtgctgctgaGTCATGGAGATGAAGGCGTGTTTTTTGGGACGGATGGAGCGCTGGAGCTGAAATCTTTAACCAGCCTGTCAGAGGAGACCGCTGCACTTCACTAGTGGGCAAACCCAAACTCTTCTTCATACAGGCCTGCAGGGGCACTGACCTGGACGCGGGTATCGAAATGGACAATCCTCCAGATGGTTCGCCTGTGAAGATCCCAGTGGAGGCAGATTTCCTCTACGCCTACTCCACAGCACCAGGTTACTACTCGTGGAGAAACACCATGACCGGCTCCTGGTTCATGCAGTCCCTCTGTGAGATGGTGCCAGCAAATACGGCAGAGAGCTGGAGCTCATGCAGATCATGACCAGGGTTAACTATAAAGTGGCGATGGACTTCGAGTCTGCGTCCAACGCTCCGGGATTCGACGCCAAAAAGCAGATTCCCTGCATCGTGTCCATGCTGACCAAAGAGATGTACTTCACTTCTTGAGATAATGCAAGATGATTTGAACACAGCTTCTGCATTTGGGTGATTGTGGCCTTGTGGAGAGAAGCTCTTCTCTGACTGACTGTGGAATTCTGGGTTTTCATGAAGTGGGATTATTTCACAGTTATCTGAATATCATTGTGGTCAAGCTTAGACTTTGtatggcaactttacaggaaagggGAAAACATGCTTCTTAAGTTTCAGGGGAAGTCAATGTCAAAAGTAATTTTAGAGctatttctattggtttatacattCTGAAATTCTGAGACAATATggaaaaaatcataattgtGCAATAGAGGGAATGTTATGGGCATTATTTTAGGCTGCTTGTACCTTTTATATTTCAGAAAATAACCATTTTTGATATTTAGATAACTGGTCAATTTCTCACTTCATGAAACTCTCACACGATTTGTAGCTTGGGACTGAGGGTGAGGTTTAGACATAACCTTGAAGCAATGGCCTGTTTGTTTTACACCTGGTTATTTCTTGTGATTATTATCTGGATTCTATCTTATAATAAGATCTAAACCACATGTGTTTACACGTGGTAGTCAAATGTGTGTCCAGTTTGTGTGCAATGGGCCATTAAGTCCAAGGCTAGTCCAGTGGAAAAAGTAGTTGGTACTCCATGCAgcctcttcctgtatttacagATGTGTTAAGAATGGTTGCTGCCTCgaaatgcaacattttttttttttacatgctgtTGCGATCTTCTAAGTTTAAAGGAATGCACAACAGATTTGGCAACCCATGCTGACGAGGAAATGAACTCGAGAATGAGTTTCGGTTGTCAAATTAGGCTGTCTTCTAAAGTGGTTTAAGAATGGTGTGTTCACACTTGCACATTCATGTGGTTTGATCTTATCCAGATATACACCTGATACTCAAGACCAGATGCATAatgtgaccaggtgtaaatggggtctattattttttttttattgagccaTGTATATGCAGAATTGTGTTTTGCTTTTGCCGTACCCCATTATGTCCATTCTAGGCAACTTTAAACGAATCAGATAAAACCACTATGCCCAAATATGAGAATATGATATTTCACCACCAAAGGACCACCACTGACCAAATGCTTTTTATCACCTATGATACCCAGACAGTAGTGGTGTTACTtttcagaaacacctacaaaaTGCATCTTTAGCTTGATTGATGTTTCtgataacaaaaaaagaccTAAAGGTGTAGATACACTGCAGGGGCAGCTAAAagaatagttttgagggaaaaaTGGATGTAATCAAGTCTTTTGTTCAAATTAACTTCTTAAGCTTTGAACTGCAGCTACGTTAGACTAAAGTTGTTCAGACTAGAAGTTAATAGCCAGGTCAAACTGCATCCATCAAGGTCAGTAAGTAGGCTTTTCATGGTAATTACTTTATCTATTATACATCTTTAAACTGGGAAAGCATCGTGTTTAATttctcaacaaaaaaaagaatttaataaTCTGTAAATCCAGAAATTCCACAGtgcatattttattcacatacTAGTTTTTCTCAAAGGTCTAGCATCATGAAATCCGGTGCAGGTCTCCGGATTTCgttcatttcattttcaatttaacCATAAAAGTTTTATACATTTCAGAAAACTTCTAAACTACTTTAGTCTTAATTGACTCGCCTATGCTCCGCCTacaattgtgattttttttttttcttttttctttttttttaagagccaGACAAGTTTGAAAATGGAGCGCCCCCAAGCATTGAGCTCTGAAACAGTGGAAGAACTCTTGTGGAATGTTCTATGTTGTGATggttggtgctccatccaatagcAATGTTCCTCCATAATGTCAAAATGCATATTAGTGAgatggtgtcccaatacttttgaccATTTCATGTGTTTTCTGTGCCACATATAAAGGGAATACAAAGTTTTGTTTGTGCATTTAATAGAAAACATCCAGTGAGGCATCGAATCCCAAGAATACTGTTctaactgttaagcatggtggtgggagcatcctCCTCTGCACTTTAGGTCATTATTTACAGACTACAAAATTCACAACAGCAGCTactaaaaacacatttgtgGGTGGAGCTTAGATAAGCCATTTGGCCCCAGTTATTCGGTAACTGAGTCTTcagcaaataatataaaataataaaaaaactagttTACATGGGATACTGTTACATAGCTACAGCTGACCCAAGTCCAAAAGGGGATGACGCTCTGCTGTACACCACAGAAAGCAAATACACTCCACTGTGAACTACTTTtgatgtcttttttttcctctttttttttcttcttcacaaCAAAGGTAGTTTTATACCTACATGCATGACGTACGTATTTATACAGTAgtgattctgttttttttttagtgtttattttgcAGAATATTCAGATTAATCAGCGTTAACATCGTATAACCACGCTTTAAACTAGCACTGGACAGCAACAAACAAACGGGTTGTATgctgtagtttaaaaaaatcagggactaaataatttttttcaaagTCGAAATCAGGATTTTGTATGTACATACCACCCATGTGCttttgtttgcgtgtgtgtttgtatttttgtgtggaAGTTTCTAGATTATTTAAGGTCATTAGATGCACTCCAGTGTTGCTTTAGAGCAGGGGCTGATCCACGAAAGTCTAAAAGACTTaagaattaaacatttttttttttttgctatgcaATAAGAGTTTAATTTGGTACGTAAGCATTATTGAACTTCTAAagcatacatttatacatttcacTTTCTAGACCATAATATGTAGAGTAATCAGCAGAAATGGTCCATTTTCAATCAAATGTTAGGTTAAAAAGAAAGGCTTTTGCCTTAACACAGGGCGACCAATCAGAACAAAGCGTGTTGTTTGCATACCGTACATTACTCTCAAAGACGTGATCTGTTTAGTtcaaacaaatacacaaatggCCTGCCAAAGGAAATGCCTTTTTTTAGGAGGACAATTGTTGAGTCAGAAGGTCTAAAGATGCTTTAAGGAGTGTGAAGGCATTCAAACACGTAATCTATGTTCCaaactgtaaagcatggtggtgggagcatcatgctTTGGGCCTTCTCATAGATGGACAGCTACTAAAGGAGCATTTTAGCCAGGACAGCTTCTGGAATGATGCTTCATCTTAGCACACTTACTTATTATTTGCATGTAGGAATCTTAAAGGGACAGTCTGCTAAATTctaaatgtgataaaaaaaagaggcaTAGCAGCCTTTCTGGTAAGCTTTTTAGaaagggatgttttttttttacagtctggtGCTATTCTTAAGAAACACAACAATGCATTTTttagatattgtgatatttctaTTAACAATACTTTTTGATTATTATTCTTTGGAAAGCTTTCGTGAGTCAGCCCCAAACGTTTTTTGCCAGTGTGCCTCAGCTTCGCTTTAAGACAATTCACGAACCAATCGAGACCGAGCTGATTCAGGTTTACTGGGGAGCACCAGTCCTTCCAGACTTCACTTTGAGGAACACTGCCTTAGACCACCAATCATACGTGACCTCGAGTGACCCTTACTGAGCCATTCTGAGTCTGTTGATCTTGTTCATATGGTTTGATTAGATAAAATATGTGGTATTTTGATTGACAGCCATGTGAGGTCTGATGCTGCGCTCCATTTACCTCAGAGTTGAACCTTTAGATATATACGCTATCACTGTTAGCGTCGTTAGCGATATCTGTCGATAGCAGTGCATTATGTGGTATTTTGCACTTCTAAACAACatgaacacatttaaacatatagaAGTTAGTACAAGATAGTACAGTGTGTATAACTGAGTTAATGAGACACCAACAGACTTCTGTTGAGTAACTCAGGATTGGTGAGGTTCCCGACGTTCCTAGTGGAAAATCCGACTTGCAGGAGCATTCCAGTTACGATTTCCCAATTAGAACCAGGAAATTCTAATTTCTGAGTCCAAATAGAACGCAGCATGAGTCCTAACTGTTGCCGGATGATACCAGCAGCCCTTGTCATCATGTACAATAGTGTTTTGCTTTGGTTTCTTGAAGATGTTCTTGCACTGCCTTTTACTCGATCCCTTTTACACAATTCCTCTGTAtttcaacaataaataaatggcaTTATGTTTTGGCAACATTAA

Function

NR:

description
PREDICTED: caspase-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247050 False 729 lncRNA 0.41 2 3440689 3443301
TU247051 False 751 lncRNA 0.40 2 3395119 3443301
XR_002651509.1 True 5271 misc_RNA 0.40 8 3442566 3454586

Neighbor

gene id symbol gene type direction distance location
helt helt coding downstream 5863 3385565 ~ 3389256 (-)
LOC103040979 slc25a4,LOC107656452,LOC107562743 coding downstream 53769 3337831 ~ 3341350 (-)
ankrd37 ankrd37 coding downstream 88813 3301420 ~ 3306306 (-)
tlr3 NA coding downstream 237611 3148161 ~ 3157508 (-)
LOC103028260 tusc3,LOC108413602 coding downstream 733893 2566363 ~ 2661226 (-)
pcdh10 LOC108415737 coding upstream 650235 4104821 ~ 4155603 (-)
LOC103028206 NA coding upstream 825700 4280286 ~ 4290987 (-)
c21h4orf33 cunh4orf33,c29h4orf33 coding upstream 937205 4391791 ~ 4395587 (-)
pi4k2b pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 coding upstream 969306 4423892 ~ 4437198 (-)
hgsnat LOC108411545 coding upstream 985963 4440549 ~ 4478292 (-)
G182423 NA non-coding downstream 100163 3230888 ~ 3294956 (-)
LOC103042415 NA non-coding downstream 112989 3268986 ~ 3282130 (-)
LOC111195174 NA non-coding downstream 204977 3168736 ~ 3190142 (-)
G182404 NA non-coding downstream 359612 3025175 ~ 3035507 (-)
G182329 NA non-coding downstream 595961 2791274 ~ 2799158 (-)
G182499 NA non-coding upstream 79802 3534388 ~ 3535619 (-)
G182500 NA non-coding upstream 81795 3536381 ~ 3536602 (-)
G182508 NA non-coding upstream 205652 3660238 ~ 3660492 (-)
G182521 LOC108413018 non-coding upstream 372038 3826624 ~ 3830420 (-)
G182528 NA non-coding upstream 385967 3840553 ~ 3840959 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 1682982 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 2887055 494190 ~ 508064 (-)
LOC103026712 NA other downstream 3346825 45736 ~ 48294 (-)
G182501 NA other upstream 93047 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 1652450 5107036 ~ 5109098 (-)
G182810 saraf other upstream 1722790 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 1831360 5285946 ~ 5295716 (-)
G183043 NA other upstream 2656784 6111370 ~ 6113092 (-)

Expression


Co-expression Network