G182571


Basic Information

Item Value
gene id G182571
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4157194 ~ 4158785 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU247176
ccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaaccacctagcaacaccttagcaaccaccccggataccattgcaacaccttagcaaccacctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccctggatacgatagcaacaccttagcaaccacttagcaacaccttagcaacaccatagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagttgtatatgtttttcttct
>TU247178
ccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaacaccttagcaaccaccccggataccattgcaacaccttagcaaccacctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccctggatacgatagcaacaccttagcaaccacttagcaacaccttagcaacaccatagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagttgtatatgtttttcttct
>TU247179
ccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccctggatacgatagcaacaccttagcaaccacttagcaacaccttagcaacaccatagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagttgtatatgtttttcttct
>TU247180
ccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccctggatacgatagcaacaccttagcaaccacttagcaacaccttagcaacaccatagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagttgtatatgtttttcttct
>TU247181
ccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccatcccatataccatagcaacaccttagcaaccgcctagcaaccacctagcaacaccttagcaaccaccccggataccattgcaacaccttagcaaccacctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccctggatacgatagcaacaccttagcaaccacttagcaacaccttagcaacaccatagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaattcagttattattattatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247176 True 388 lncRNA 0.50 2 4158344 4158785
TU247178 False 312 lncRNA 0.49 2 4158344 4158785
TU247179 False 236 lncRNA 0.48 2 4158344 4158785
TU247180 False 323 lncRNA 0.49 3 4158344 4158785
TU247181 False 383 lncRNA 0.49 3 4157194 4158785

Neighbor

gene id symbol gene type direction distance location
pcdh10 LOC108415737 coding downstream 1591 4104821 ~ 4155603 (-)
helt helt coding downstream 767938 3385565 ~ 3389256 (-)
LOC103040979 slc25a4,LOC107656452,LOC107562743 coding downstream 815844 3337831 ~ 3341350 (-)
ankrd37 ankrd37 coding downstream 850888 3301420 ~ 3306306 (-)
tlr3 NA coding downstream 999686 3148161 ~ 3157508 (-)
LOC103028206 NA coding upstream 121501 4280286 ~ 4290987 (-)
c21h4orf33 cunh4orf33,c29h4orf33 coding upstream 233006 4391791 ~ 4395587 (-)
pi4k2b pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 coding upstream 265107 4423892 ~ 4437198 (-)
hgsnat LOC108411545 coding upstream 281764 4440549 ~ 4478292 (-)
LOC103036327 LOC108415078,LOC107562921,LOC107702324 coding upstream 360345 4519130 ~ 4559920 (-)
G182557 NA non-coding downstream 77785 4079080 ~ 4079409 (-)
G182550 NA non-coding downstream 99854 4057080 ~ 4057340 (-)
G182540 NA non-coding downstream 159544 3997441 ~ 3997650 (-)
G182534 NA non-coding downstream 223987 3933008 ~ 3933207 (-)
G182528 NA non-coding downstream 316235 3840553 ~ 3840959 (-)
LOC111195176 NA non-coding upstream 329779 4488564 ~ 4491390 (-)
LOC111195177 NA non-coding upstream 354915 4513700 ~ 4515883 (-)
LOC111195163 NA non-coding upstream 634426 4793211 ~ 4794427 (-)
G182672 NA non-coding upstream 688100 4846885 ~ 4849992 (-)
G182671 NA non-coding upstream 689486 4848271 ~ 4849196 (-)
G182501 NA other downstream 606781 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 702608 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 2445057 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 3649130 494190 ~ 508064 (-)
LOC103026712 NA other downstream 4108900 45736 ~ 48294 (-)
LOC103027068 NA other upstream 948251 5107036 ~ 5109098 (-)
G182810 saraf other upstream 1018591 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 1127161 5285946 ~ 5295716 (-)
G183043 NA other upstream 1952585 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 2193390 6352175 ~ 6408023 (-)

Expression


Co-expression Network