LOC111195177


Basic Information

Item Value
gene id LOC111195177
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4513700 ~ 4515883 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU247294
GAACGCAGACCCTGTACATTGAACTGcgtcttttccttttttctactGCACGTTTACCTACAATCCTTTTACTCACTCACTGCTGGCCAATGGCAATGGGGTGCCATAACATAGTGACTGAACCATAACCCTCATCCCACAGCTTTTTTTAATCTATCTAGAGCAACAAACACTGGATCCACCTACCCGCTCCCCCATCCTccatgctactactactactactaccttgtaGAGAGATGATGATGAACTGTAACCCCGATCGGCATGCTAACGGTGTTTAATCCTGCACTTAACGAGGAAACCGAACCGGCATTGGTGACTTCTTCTTAATTCTTCTTTTGGTTTCTGTTTGGCGCGAGCGGCGGACGGCCTTCCCTGCTCGCTCCGATCCAATTAATTGACTCAATCGATTAGCGTTTAACAGCAGCGAAGGCTTGGGAACGGTTTGAAAGGGTTGGTATGTTACCTGTAAAAGTTTGACTTTG
>TU247296
GAACGCAGACCCTGTACATTGAACTGcgtcttttccttttttctactGCACGTTTACCTACAATCCTTTTACTCACTCACTGCTGGCCAATGGCAATGGGGTGCCATAACATAGTGACTGAACCATAACCCTCATCCCACAGCTTTTTTTAATCTATCTAGAGCAACAAACACTGGATCCACCTACCCGCTCCCCCATCCTccatgctactactactactactaccttgtaGAGAGATGATGATGAACTGTAACCCCGATCGGCATGCTAACGGTGTTTAATCCTGCACTTAACGAGGAAACCGAACCGGCATTGGTGACTTCTTCTTAATTCTTCTTTTGGTTTCTGTTTGGCGCGAGCGGCGGACGGCCTTCCCTGCTCGCTCCGATCCAATTAATTGACTCAATCGATTAGCGTTTAACAGCAGCGAAGGCTTGGGAACGGTTTGAAAG
>TU247297
ctctctctgtctgtttatctgtccctttctccctctttctcctttACTGTATGACTCTTACTCTCTTTCATTCCTGATTTGattcctgtctctctgtctctttatctctctctcttgtctcatAGTTTgaggtgtctctctctttcctatTGTGTTCTCAATCAGGATCATCTCCCCCTTCGTCTTGTGGACGTTTAAACTGTGtgttatataagtgtgtgtgtgtgtgtgtgtcgctgGTCCTCTGTGGTGTAAATCATCTCTCCTGTCTGAACACGGAGCTGCCTTTGGTCCTTTTCGGACCGGTGGACTCCAGTCCATCTATGCCAAAATCTCACCAGGTTCTCCAGCTGGCAAACACAAACTGACCTCGAGCTCCGGGTACCCGCCGTGCCCGGACGCGAGGCGGAACGAGGGACAGGACTTCCAGGGTTTCTAAATCCAGGAGCCGGTGGAACGTTCGAGGGGAGCCGGTCCTTCTGGAACCTAAAGGAACACTGCGGCGGCGGCAACGGTTCCGTCGCCAGAGGCTAAATCTTAGGCTAAATCTGCTGTTCTA
>XR_002651511.1
aagtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgctgGTCCTCTGTGGTGTAAATCATCTCTCCTGTCTGAACACGGAGCTGCCTTTGGTCCTTTTCGGACCGGTGGACTCCAGTCCATCTATGCCAAAATCTCACCAGGTTCTCCAGCTGGCAAACACAAACTGACCTCGAGCTCCGGGTACCCGCCGTGCCCGGACGCGAGGCGGAACGAGGGACAGGACTTCCAGGGTTTCTAAATCCAGGAGCCGGTGGAACGTTCGAGGGGAGCCGGTCCTTCTGGAACCTAAAGGAACACTGCGGCGGCGGCAACGGTTCCGTCGCCAGAGGCTAAATCTTAGGCTAAATCTGCTGTTCTAGAGCAGTGTGTAATTATTCCTGTACAGTTTGCGGGTGGGGTTTGGGGGAGGGGTGGGGCGGGCAGGGTTTGTTTGGGGGAGGCTGGGGTGGGCGGGGCCGAACGCAGACCCTGTACATTGAACTGcgtcttttccttttttctactGCACGTTTACCTACAATCCTTTTACTCACTCACTGCTGGCCAATGGCAATGGGGTGCCATAACATAGTGACTGAACCATAACCCTCATCCCACAGCTTTTTTTAATCTATCTAGAGCAACAAACACTGGATCCACCTACCCGCTCCCCCATCCTccatgctactactactactactaccttgtaGAGAGATGATGATGAACTGTAACCCCGATCGGCATGCTAACGGTGTTTAATCCTGCACTTAACGAGGAAACCGAACCGGCATTGGTGACTTCTTCTTAATTCTTCTTTTGGTTTCTGTTTGGCGCGAGCGGCGGACGGCCTTCCCTGCTCGCTCCGATCCAATTAATTGACTCAATCGATTAGCGTTTAACAGCAGCGAAGGCTTGGGAACGGTTTGAAAGGGTTGGTATGTTACCTGTAAAAGTTTGACTTTGACATTAAAACTGCTTCAAACCTC

Function

GO:

id name namespace
GO:0006811 ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247294 False 485 lncRNA 0.46 1 4513723 4514207
TU247296 False 452 lncRNA 0.47 1 4513756 4514207
TU247297 False 559 lncRNA 0.51 1 4514307 4514865
XR_002651511.1 True 981 lncRNA 0.52 2 4513700 4515883

Neighbor

gene id symbol gene type direction distance location
hgsnat LOC108411545 coding downstream 35408 4440549 ~ 4478292 (-)
pi4k2b pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 coding downstream 76502 4423892 ~ 4437198 (-)
c21h4orf33 cunh4orf33,c29h4orf33 coding downstream 118113 4391791 ~ 4395587 (-)
LOC103028206 NA coding downstream 222713 4280286 ~ 4290987 (-)
pcdh10 LOC108415737 coding downstream 358097 4104821 ~ 4155603 (-)
LOC103036327 LOC108415078,LOC107562921,LOC107702324 coding upstream 3247 4519130 ~ 4559920 (-)
LOC103027755 NA coding upstream 304057 4819940 ~ 4832478 (-)
LOC103031161 NA coding upstream 337766 4853649 ~ 4876273 (-)
LOC103029567 rbpja,LOC103029567,LOC108441335,LOC108260898,LOC107563830,LOC107742494,LOC105903551,LOC107562987,LOC107702317 coding upstream 374591 4890474 ~ 4904539 (-)
LOC103030845 LOC108441329 coding upstream 402251 4918134 ~ 4931683 (-)
LOC111195176 NA non-coding downstream 22310 4488564 ~ 4491390 (-)
G182571 NA non-coding downstream 354915 4157194 ~ 4158785 (-)
G182557 NA non-coding downstream 434291 4079080 ~ 4079409 (-)
G182550 NA non-coding downstream 456360 4057080 ~ 4057340 (-)
G182540 NA non-coding downstream 516050 3997441 ~ 3997650 (-)
LOC111195163 NA non-coding upstream 277328 4793211 ~ 4794427 (-)
G182672 NA non-coding upstream 331002 4846885 ~ 4849992 (-)
G182671 NA non-coding upstream 332388 4848271 ~ 4849196 (-)
G182706 NA non-coding upstream 334706 4850589 ~ 4851408 (-)
G182710 NA non-coding upstream 350332 4866215 ~ 4950825 (-)
G182501 NA other downstream 963287 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 1059114 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 2801563 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 4005636 494190 ~ 508064 (-)
LOC103026712 NA other downstream 4465406 45736 ~ 48294 (-)
LOC103027068 NA other upstream 591153 5107036 ~ 5109098 (-)
G182810 saraf other upstream 661493 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 770063 5285946 ~ 5295716 (-)
G183043 NA other upstream 1595487 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 1836292 6352175 ~ 6408023 (-)

Expression


Co-expression Network