LOC111195163


Basic Information

Item Value
gene id LOC111195163
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4793211 ~ 4794427 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU247314
CAAGATCACATGATTAGATTTTTACAGCTAGAGATTATGTCCTATCCTTAACAGCTCTACTCCATTCATTATTGGTAAGAGACACCAAAGTCTCTTAAATTAGCATCAGTTGACCTGTTCAGGTAAGTCCCACCCTCTGCTTACTTGAACAGGTTAAGAACATCACCTGGGCTCATTAAAGTTGtagtgtttttcttcagcctttaaaaagttgaacatgtttaattttcttt
>XR_002651500.1
AGTGTGTGTCCGGTGTGTGTTCTTCTCTCCTCACTGCTCTCCTCCACCTGTGTGTACTTCATGTGCAAATCTAGAATCAAAGTGGAGAAGAATGCTGAGAAGAAAAGGAGGAATGCTCTGAACATAACTGACTTAGCTAAGGTTGGAGAAGAAGATGAGGTGTGTTATGCTTCTTTGGATCTCCCAAGTAGAGGACAAAAACGTctaaagaagaagaggagatcTGAGAGTTCTGATTTCTGCACTTATTCTGCGATTAAAACTGACAGAATTTAGATTTTCAGAGGAAGGTTCTGAAGATCAGAGAGCTAACGTTATGAAATAGTTCATTCTGACAGGATTTAATGGACAAGACACAAGACAAGATCACATGATTAGATTTTTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247314 False 233 lncRNA 0.36 1 4793211 4793443
XR_002651500.1 True 387 lncRNA 0.40 3 4793418 4794427

Neighbor

gene id symbol gene type direction distance location
LOC103036327 LOC108415078,LOC107562921,LOC107702324 coding downstream 233291 4519130 ~ 4559920 (-)
hgsnat LOC108411545 coding downstream 314919 4440549 ~ 4478292 (-)
pi4k2b pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 coding downstream 356013 4423892 ~ 4437198 (-)
c21h4orf33 cunh4orf33,c29h4orf33 coding downstream 397624 4391791 ~ 4395587 (-)
LOC103028206 NA coding downstream 502224 4280286 ~ 4290987 (-)
LOC103027755 NA coding upstream 25513 4819940 ~ 4832478 (-)
LOC103031161 NA coding upstream 59222 4853649 ~ 4876273 (-)
LOC103029567 rbpja,LOC103029567,LOC108441335,LOC108260898,LOC107563830,LOC107742494,LOC105903551,LOC107562987,LOC107702317 coding upstream 96047 4890474 ~ 4904539 (-)
LOC103030845 LOC108441329 coding upstream 123707 4918134 ~ 4931683 (-)
LOC103030534 LOC108441328,LOC108260848,LOC105903575,LOC105020871 coding upstream 159385 4953812 ~ 4969692 (-)
LOC111195177 NA non-coding downstream 277328 4513700 ~ 4515883 (-)
LOC111195176 NA non-coding downstream 301821 4488564 ~ 4491390 (-)
G182571 NA non-coding downstream 634426 4157194 ~ 4158785 (-)
G182557 NA non-coding downstream 713802 4079080 ~ 4079409 (-)
G182550 NA non-coding downstream 735871 4057080 ~ 4057340 (-)
G182672 NA non-coding upstream 52458 4846885 ~ 4849992 (-)
G182671 NA non-coding upstream 53844 4848271 ~ 4849196 (-)
G182706 NA non-coding upstream 56162 4850589 ~ 4851408 (-)
G182710 NA non-coding upstream 71788 4866215 ~ 4950825 (-)
LOC111195178 NA non-coding upstream 87848 4882275 ~ 4889086 (-)
G182501 NA other downstream 1242798 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 1338625 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 3081074 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 4285147 494190 ~ 508064 (-)
LOC103026712 NA other downstream 4744917 45736 ~ 48294 (-)
LOC103027068 NA other upstream 312609 5107036 ~ 5109098 (-)
G182810 saraf other upstream 382949 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 491519 5285946 ~ 5295716 (-)
G183043 NA other upstream 1316943 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 1557748 6352175 ~ 6408023 (-)

Expression


Co-expression Network