G182943 (LOC108414272,LOC107741621,LOC107564376,LOC107559181,LOC108414004,LOC107559180,LOC108415460)


Basic Information

Item Value
gene id G182943
gene name LOC108414272,LOC107741621,LOC107564376,LOC107559181,LOC108414004,LOC107559180,LOC108415460
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 5709379 ~ 5710339 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU247735
ATTTTCTGCTGGATCTGTTCTCTCATGTGAAGAAGTATGAGACTGAAACAGGCAGGACGGTTCTTCCAGCATTACAACCAGTTTACCAGTCAGCTCCTGCAGTCTGGAGAATAAACCtctcagagagaaagagctccATCTTACTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTAGAACTGAGAGGCTGCTCAGATGAAGAGAGTGAAGTGTGGAGTTTCCTTCAGTGTCTGCCCTTCATCTCCCAGCTGAAGTTAAATTGTCAACAGCAGAATTCAGTTCTCAATTTCTGCTTAAGCTGATTGCTGCAGCAGCAGGGTGTGATTCAGCTACAGAGAACTTCACTACACTGCTGACATCTGTGTGCAGCTACACA
>TU247737
ATTTTCTGCTGGATCTGTTCTCTCATGTGAAGAAGTATGAGACTGAAACAGGCAGGACGGTTCTTCCAGCATTACAACCAGTTTACCAGTCAGCTCCTGCAGTCTGGAGAATAAACCtctcagagagaaagagctccATCTTACTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTAGAACTGAGAGGCTGCTCAGATGAAGAGAGTGAAGTGTGGAGTTTCCTTCAGTGTCTGCCCTTCATCTCCCAGCTGAAGTTTATAAATTGTCAACAGCAGAATTCAGTTCTCAATTTCTGCTTAAGCTGATTGCTGCAGCAGCAGGGTGTGATTCAGCTACAGAGAACTTCACTACACTGCTGACATCTGTGTGCAGCTACACA
>TU247738
ATTTTCTGCTGGATCTGTTCTCTCATGTGAAGAAGTATGAGACTGAAACAGGCAGGACGGTTCTTCCAGCATTACAACCAGTTTACCAGTCAGCTCCTGCAGTCTGGAGAATAAACCtctcagagagaaagagctccATCTTACTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTAGAACTGAGAGGATGCTCAGATGAAGAGAGTGAAGTGAGAAGTTT

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107564376, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247735 False 382 lncRNA 0.45 2 5709652 5710339
TU247737 True 385 lncRNA 0.45 2 5709652 5710339
TU247738 False 226 lncRNA 0.44 2 5709379 5710339

Neighbor

gene id symbol gene type direction distance location
LOC103031479 mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134 coding downstream 14773 5620192 ~ 5694606 (-)
LOC111195262 NA coding downstream 328556 5379717 ~ 5380823 (-)
LOC103026500 saraf coding downstream 496152 5208590 ~ 5213227 (-)
xpa NA coding downstream 504647 5199748 ~ 5204732 (-)
LOC111195182 saraf coding downstream 526365 5177370 ~ 5183014 (-)
LOC111195189 NA coding upstream 125320 5835659 ~ 5844491 (-)
LOC111195190 klf12b,klf12,LOC107668887,LOC107740907 coding upstream 155695 5866034 ~ 5890681 (-)
tbc1d1 tbc1d1 coding upstream 218399 5928738 ~ 6024934 (-)
pgm2 pgm2,LOC107746017,LOC107591526,LOC107551595 coding upstream 320371 6030710 ~ 6048490 (-)
frmpd1 frmpd1,LOC107570223 coding upstream 342396 6052735 ~ 6100443 (-)
G182922 NA non-coding downstream 163952 5544880 ~ 5545427 (-)
G182908 NA non-coding downstream 212646 5493842 ~ 5496733 (-)
LOC111195188 NA non-coding downstream 255619 5398570 ~ 5453760 (-)
G182890 NA non-coding downstream 291444 5417403 ~ 5417935 (-)
G182875 NA non-coding downstream 350435 5357542 ~ 5358944 (-)
G182949 NA non-coding upstream 3548 5713887 ~ 5714280 (-)
G182951 NA non-coding upstream 4355 5714694 ~ 5715119 (-)
G182956 NA non-coding upstream 124652 5834991 ~ 5835563 (-)
G183016 NA non-coding upstream 252119 5962458 ~ 5963350 (-)
G183058 NA non-coding upstream 489343 6199682 ~ 6200189 (-)
LOC111195184 NA other downstream 413663 5285946 ~ 5295716 (-)
G182810 saraf other downstream 496228 5177376 ~ 5213151 (-)
LOC103027068 NA other downstream 600281 5107036 ~ 5109098 (-)
G182501 NA other downstream 2158966 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 2254793 3395119 ~ 3454586 (-)
G183043 NA other upstream 401031 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 641836 6352175 ~ 6408023 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 711764 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 1455054 7165393 ~ 7303192 (-)
LOC111195271 NA other upstream 1779736 7490075 ~ 7502429 (-)

Expression


Co-expression Network