G182949


Basic Information

Item Value
gene id G182949
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 5713887 ~ 5714280 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU247744
CAGCACACTGATTTACTCACCACTTTAAACACACAGGAGGTGCAGCCCCCATTCAGACTCCCTGATAAATCAGTTCAGAGAAATGCTCAATGACCTGCATTCATATCTGTCCAGCAGGGAGACAAATGAAGATGTAGAGCATACCGAATTACTTGCTGCATTTGTTCCTCAGCCTCGTTTTCCTGGATATCATGTGCGTCTTTACCAGTTTGGTAATATTATAAATTGCAATGTAAAACTTGACTTAAAGCCACAGAAACCAGAAATACTCAAAATAAATCCAACATGTGTTTCCCTGAGGCTGCAAAGATCAGAGTCCAGCATTGTTCAGTGGCACAGGGTGGAGTACAGAGCAGTGGTCTGCAGAGGAAACAGTCCTGATGGTTTGAAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247744 True 394 lncRNA 0.43 1 5713887 5714280

Neighbor

gene id symbol gene type direction distance location
LOC103031479 mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134 coding downstream 19281 5620192 ~ 5694606 (-)
LOC111195262 NA coding downstream 333064 5379717 ~ 5380823 (-)
LOC103026500 saraf coding downstream 500660 5208590 ~ 5213227 (-)
xpa NA coding downstream 509155 5199748 ~ 5204732 (-)
LOC111195182 saraf coding downstream 530873 5177370 ~ 5183014 (-)
LOC111195189 NA coding upstream 121379 5835659 ~ 5844491 (-)
LOC111195190 klf12b,klf12,LOC107668887,LOC107740907 coding upstream 151754 5866034 ~ 5890681 (-)
tbc1d1 tbc1d1 coding upstream 214458 5928738 ~ 6024934 (-)
pgm2 pgm2,LOC107746017,LOC107591526,LOC107551595 coding upstream 316430 6030710 ~ 6048490 (-)
frmpd1 frmpd1,LOC107570223 coding upstream 338455 6052735 ~ 6100443 (-)
G182943 LOC108414272,LOC107741621,LOC107564376,LOC107559181,LOC108414004,LOC107559180,LOC108415460 non-coding downstream 3548 5709379 ~ 5710339 (-)
G182922 NA non-coding downstream 168460 5544880 ~ 5545427 (-)
G182908 NA non-coding downstream 217154 5493842 ~ 5496733 (-)
LOC111195188 NA non-coding downstream 260127 5398570 ~ 5453760 (-)
G182890 NA non-coding downstream 295952 5417403 ~ 5417935 (-)
G182951 NA non-coding upstream 414 5714694 ~ 5715119 (-)
G182956 NA non-coding upstream 120711 5834991 ~ 5835563 (-)
G183016 NA non-coding upstream 248178 5962458 ~ 5963350 (-)
G183058 NA non-coding upstream 485402 6199682 ~ 6200189 (-)
G183121 NA non-coding upstream 642001 6356281 ~ 6367173 (-)
LOC111195184 NA other downstream 418171 5285946 ~ 5295716 (-)
G182810 saraf other downstream 500736 5177376 ~ 5213151 (-)
LOC103027068 NA other downstream 604789 5107036 ~ 5109098 (-)
G182501 NA other downstream 2163474 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 2259301 3395119 ~ 3454586 (-)
G183043 NA other upstream 397090 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 637895 6352175 ~ 6408023 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 707823 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 1451113 7165393 ~ 7303192 (-)
LOC111195271 NA other upstream 1775795 7490075 ~ 7502429 (-)

Expression


Co-expression Network