G183121


Basic Information

Item Value
gene id G183121
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6356281 ~ 6367173 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248015
ccagtcttacacactgcttttggataactttatgctctttacactcctggtgcaaaaattcaagcagttcagcttaaactggtttgatggcttgtgatcgttcatcttcctcttgattatattccagaggttttcaatttgctaaaatcaaagaaactcatcatttttaagtgctctcttattattaGTAGATTGATTATGCAGACAAGCCTTTGTATGAACGTTGTTGAatgaacgttgattcaatgtcgGCTTGTCAACACTAACCGTTGCCCATGAGGGAATGTTCAATGAAGGTTGTTGTTGAGGTGGTTAGTCCATCATCAACGTAAAAAAAAGGGTGCAATGCAAGCAAAATAGTAAAGtctgtttgatgttttttgctATCAGGGCAGAGTCTAAAAGACGATGAGGCGATGAGGAGGAAGGTTACCTTGCCATTGACACTCTCTCAGTGCTTCCTTATCCTGAAATAATTTTCTCCTGGGTGGGAAGGGATGGATTTGCGGGGCGGTAGAGAGGGAATGTGATCAATGGAATAGTTTTAATATGCCTAATCCTGATGGCATTGGAGAGAGGGGTTAGGAAGATGTGATGAGAttacagaagagaaaaagagagagagagagagagagagagagagagagagagagctagggAGGAGGTGGAGAGCAGGTCGGGTGGGATAGAGTGAATGAGAGAAGATGAGAAAAGAGCTCGGACGTTTGGTTTTGATGGCACAGCAGGTTTTAAAGTGTCCCTGTGGGGAGGGGTTGCGTGGTGGTGACCTGGCAGAGGACAAAaggactgtgtgtgtaagagtgtgtgtaagagtgtgtgtaagagtgtgtataagtgtaagagtgtgtgtgtacagtacaggTTTGAAAGGAGGTGACGTGAAGGGCAAGAACCGCACCAGTAAAGCCCACTCAGTGTTACTGCTCAGCGTCACAACTGTCAATCACTGTCCTCTGAGCCAATGGGAGGCTTCTCCCAGTCGTCTACCGTAACCTGGGGTGGGGGGTCGAGTCAACGGCGAGGTCCAATCCCGTTACAGTGGGACGGAGAATTGAGAACAGCTGGAATATCAAAGAGGAAACAGCTGTGTTAAATTCGGCGTAAATATTTCCTGCGTAAAGGTCATTAGGGGTTGG

Function

GO: NA

KEGG:

id description
ko04662 B cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU248015 True 1157 lncRNA 0.45 2 6356281 6367173

Neighbor

gene id symbol gene type direction distance location
zcchc7 NA coding downstream 119170 6150690 ~ 6237111 (-)
LOC103028109 NA coding downstream 215928 6127155 ~ 6140353 (-)
frmpd1 frmpd1,LOC107570223 coding downstream 255838 6052735 ~ 6100443 (-)
pgm2 pgm2,LOC107746017,LOC107591526,LOC107551595 coding downstream 307791 6030710 ~ 6048490 (-)
tbc1d1 tbc1d1 coding downstream 331347 5928738 ~ 6024934 (-)
melk melk,LOC107750464 coding upstream 13230 6380403 ~ 6403796 (-)
LOC111195268 NA coding upstream 768602 7135775 ~ 7149290 (-)
LOC111195269 NA coding upstream 797265 7164438 ~ 7168366 (-)
LOC111195200 NA coding upstream 813705 7180878 ~ 7188349 (-)
LOC103027790 LOC108443989,LOC108260977,LOC105904014 coding upstream 824418 7191591 ~ 7201973 (-)
G183058 NA non-coding downstream 156092 6199682 ~ 6200189 (-)
G183016 NA non-coding downstream 392931 5962458 ~ 5963350 (-)
G182956 NA non-coding downstream 520718 5834991 ~ 5835563 (-)
G182951 NA non-coding downstream 641162 5714694 ~ 5715119 (-)
G182949 NA non-coding downstream 642001 5713887 ~ 5714280 (-)
G183134 NA non-coding upstream 107817 6474990 ~ 6666542 (-)
G183152 NA non-coding upstream 169022 6536195 ~ 6561601 (-)
G183158 NA non-coding upstream 224849 6592022 ~ 6636312 (-)
G183188 NA non-coding upstream 509974 6877147 ~ 6880030 (-)
G183306 NA non-coding upstream 1113208 7480381 ~ 7489159 (-)
G183043 NA other downstream 243189 6111370 ~ 6113092 (-)
LOC111195184 NA other downstream 1060565 5285946 ~ 5295716 (-)
G182810 saraf other downstream 1143130 5177376 ~ 5213151 (-)
LOC103027068 NA other downstream 1247183 5107036 ~ 5109098 (-)
G182501 NA other downstream 2805868 3547633 ~ 3550413 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 54930 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 798220 7165393 ~ 7303192 (-)
LOC111195271 NA other upstream 1122902 7490075 ~ 7502429 (-)
G183559 NA other upstream 3288140 9655313 ~ 9657614 (-)
G183585 NA other upstream 3478649 9845822 ~ 9852381 (-)

Expression


Co-expression Network