LOC111195197 (zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338)


Basic Information

Item Value
gene id LOC111195197
gene name zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6422103 ~ 6426583 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248021
ATGTTCTCTTTAGCGTTGCTGCAGCCATGGTGAGCTACTGCCCCATCTGCGGAAAGCCCGTCTATTTTGGTGAGAAGAAGAGGTCTCTGGGACGGGACTATCACCCGCTGTGCCTGAAGTGCCACAAGTGTAAGAGACAGCTCACTCCAGGACAACATGCAGAgcaTGATGAGAAGCCCTACTGCACAAACTGCTACATGAGAGACTTCGGACCTCGAGGAAGCAGAGGACCAGTGTCTCGCACCTGTAACACAGCCGCCTCCTAAGAGACATGTAGCCGTGTCTTCTCCAGcaactttaaaaagatcaaaaacatcaaaaacgtCTCTGGATTAGAAGAACCTGATCGAGACACATTATTACACGTATATAGCAAAATTATTACTAAACGttaaagtactttttgtacatttttatacagttttatttgttgttttctcCATGTCTGCCGTTAAATGATTTTACGAGGTTAAATATAACAGAgtatgtttttcattttatatattttttttaaggttttaaagattgtttatgtttatatttttatgtaggcatttattttttatacatgtagCTGTCATCATAAAATTACTGTATCAAGCTACTGTTTAAAAGTGTGCAGGACTtatttgtccaccctgtcaaCTTGGGTTAACtacctattaaaaaaaacaaacaaacaaaaaaacaaaacaaagaagacaga
>XM_022681755.1
cttCCTGTCAACGCACACCTCGTCTTGCCACATCCTCCAGAGCGCTGCGTTTTCGAGCGCTAGCGCATTTCCTGCATGTTCTCTTTAGCGTTGCTGCAGCCATGGTGAGCTACTGCCCCATCTGCGGAAAGCCCGTCTATTTTGGTGAGAAGAAGAGGTCTCTGGGACGGGACTATCACCCGCTGTGCCTGAAGTGCCACAAGTGTAAGAGACAGCTCACTCCAGGACAACATGCAGAgcaTGATGAGAAGCCCTACTGCACAAACTGCTACATGAGAGACTTCGGACCTCGAGGAAGCAGAGGACCAGTGTCTCGCACCTGTAACACAGCCGCCTCCTAAGAGACATGTAGCCGTGTCTTCTCCAGcaactt

Function

symbol description
zgc:195282 Predicted to enable zinc ion binding activity. Predicted to be involved in intrinsic apoptotic signaling pathway in response to DNA damage and regulation of gene expression.

NR:

description
PREDICTED: cysteine-rich protein 2-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248021 True 706 TUCP 0.38 4 6422103 6426508
XM_022681755.1 False 373 mRNA 0.54 4 6422511 6426583

Neighbor

gene id symbol gene type direction distance location
melk melk,LOC107750464 coding downstream 18307 6380403 ~ 6403796 (-)
zcchc7 NA coding downstream 184992 6150690 ~ 6237111 (-)
LOC103028109 NA coding downstream 281750 6127155 ~ 6140353 (-)
frmpd1 frmpd1,LOC107570223 coding downstream 321660 6052735 ~ 6100443 (-)
pgm2 pgm2,LOC107746017,LOC107591526,LOC107551595 coding downstream 373613 6030710 ~ 6048490 (-)
LOC111195268 NA coding upstream 709192 7135775 ~ 7149290 (-)
LOC111195269 NA coding upstream 737855 7164438 ~ 7168366 (-)
LOC111195200 NA coding upstream 754295 7180878 ~ 7188349 (-)
LOC103027790 LOC108443989,LOC108260977,LOC105904014 coding upstream 765008 7191591 ~ 7201973 (-)
LOC103041735 glrba,LOC108443987,LOC107702391,LOC107591559,LOC107655919,LOC107548353 coding upstream 882938 7309521 ~ 7368234 (-)
G183121 NA non-coding downstream 54930 6356281 ~ 6367173 (-)
G183058 NA non-coding downstream 221914 6199682 ~ 6200189 (-)
G183016 NA non-coding downstream 458753 5962458 ~ 5963350 (-)
G182956 NA non-coding downstream 586540 5834991 ~ 5835563 (-)
G182951 NA non-coding downstream 706984 5714694 ~ 5715119 (-)
G183134 NA non-coding upstream 48407 6474990 ~ 6666542 (-)
G183152 NA non-coding upstream 109612 6536195 ~ 6561601 (-)
G183158 NA non-coding upstream 165439 6592022 ~ 6636312 (-)
G183188 NA non-coding upstream 450564 6877147 ~ 6880030 (-)
G183306 NA non-coding upstream 1053798 7480381 ~ 7489159 (-)
tmsb10 NA other downstream 14080 6352175 ~ 6408023 (-)
G183043 NA other downstream 309011 6111370 ~ 6113092 (-)
LOC111195184 NA other downstream 1126387 5285946 ~ 5295716 (-)
G182810 saraf other downstream 1208952 5177376 ~ 5213151 (-)
LOC103027068 NA other downstream 1313005 5107036 ~ 5109098 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 738810 7165393 ~ 7303192 (-)
LOC111195271 NA other upstream 1063492 7490075 ~ 7502429 (-)
G183559 NA other upstream 3228730 9655313 ~ 9657614 (-)
G183585 NA other upstream 3419239 9845822 ~ 9852381 (-)
G183880 NA other upstream 4879706 11306289 ~ 11306821 (-)

Expression


Co-expression Network