LOC111195271


Basic Information

Item Value
gene id LOC111195271
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7490075 ~ 7502429 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248263
GCTGAGATGGTCTGTTGGTCACAAACAGACacataaagagagaaagtgattcagCGTTTTAGTCGTTTCGAACTCGTCTCTAGAACAGACATGTCTGAGAACATTTACAGCAATGAGATGAGCATCGAGGAGCTGaacagtggagataaagtggaGATGATGGTGGAGATCTACGAGAGCACAGACACTATTAGAGACCATGACCACAACACAGAGGTGAAGGGTGGTGAACCAGAGGAAACCAAACTAAAGAGGAAGCCGCAAACAGAACAGGGAGGAGATACCCATACAGCAGAGAGCAGGCGATACAGACTGGCTGCAGTGGGTttggttctgctgtgtgttctcCTGCTGTTGACCATCACACTGCTGTGCATTAGGCTCAACAACCTGACTGGAGAGAGAAACCAGTTACAGGCCAGCTACACCAGCATGACTGCCGACAGAGACCAGCTACAGACCAACTACACCAAcatgactgcagagagagatcAAAACAAAAGATGGCTTTCAACAATGGTTAACTACACCCAACAGGAGTGGAGGGTCTTCAAC
>XM_022682144.1
TAGAATAGATTGCTGGGTTTAAAGGACCTGCTGCTAGGGTCTTAAATCCACATTCCACAGGagacaccttcagaggtcttgtagAGTCCATGCCTCTGGAGTTCAAAGCTCTTTTGCTGGTAGGTTGGAGACTTGCGTGAGATTAGACAAAGAATTAACCATGATACAGTTGTTAATTTCATGTTATAATATTGAAAAAAGTAATACTGACAGTAGTTTCAGACCTCACCCCTGTAGAGCAAATCACAGGAAGCAGCATGACCGTGGAGGGTATGATGCAACTGTAGCCCaagtaaaaggaagcagaaacCTTTAGAGTAGCCGCTTCCGTTACTGGCAGTTCTGTTATGACACTCAGCTGAGATGGTCTGTTGGTCACAAACAGACacataaagagagaaagtgattcagCGTTTTAGTCGTTTCGAACTCGTCTCTAGAACAGACATGTCTGAGAACATTTACAGCAATGAGATGAGCATCGAGGAGCTGaacagtggagataaagtggaGATGATGGTGGAGATCTACGAGAGCACAGACACTATTAGAGACCATGACCACAACACAGAGGTGAAGGGTGGTGAACCAGAGGAAACCAAACTAAAGAGGAAGCCGCAAACAGAACAGGGAGGAGATACCCATACAGCAGAGAGCAGGCGATACAGACTGGCTGCAGTGGGTttggttctgctgtgtgttctcCTGCTGTTGACCATCACACTGCTGTGCATTAGGCTCAACAACCTGACTGGAGAGAGAAACCAGTTACAGGCCAGCTACACCAGCATGACTGCCGACAGAGACCAGCTACAGACCAACTACACCAAcatgactgcagagagagatcAAAACAAAAGATGGCTTTCAACAATGGTTAACTACACCCAACAGGAGTGGAGGGTCTTCAACACCAGCCTTTACTACGTCTCTACTGAGTGGAAGAGCTGGACTGAGAGCAGAGACGACTGCAAACAGAGAGGAGCAGATCTGGTGATCATCAGCAGCAAAGAGGAACagGAGTTCattaaaaagctgaaaaacaaCAACGTCTGGATTGGTCTGAATAAAACAGAGGGGGTCTGGAAATGGGTGGACGGATCAAGACTGGATCACTGGGTTCTGGAAAACTGGAAAACCTAG

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002252 immune effector process biological_process
GO:0002253 activation of immune response biological_process
GO:0050896 response to stimulus biological_process
GO:0072376 protein activation cascade biological_process
GO:0006955 immune response biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0048584 positive regulation of response to stimulus biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko05150 Staphylococcus aureus infection
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
TU248263 False 555 TUCP 0.48 3 7490506 7502072
XM_022682144.1 True 1143 mRNA 0.46 5 7490075 7502429

Neighbor

gene id symbol gene type direction distance location
LOC111195270 NA coding downstream 5317 7481599 ~ 7484758 (-)
ncapd3 ncapd3 coding downstream 31345 7419349 ~ 7458730 (-)
wdr19 wdr19,LOC107591558,LOC107750430 coding downstream 73042 7380244 ~ 7417033 (-)
LOC103041735 glrba,LOC108443987,LOC107702391,LOC107591559,LOC107655919,LOC107548353 coding downstream 121841 7309521 ~ 7368234 (-)
LOC103027790 LOC108443989,LOC108260977,LOC105904014 coding downstream 288102 7191591 ~ 7201973 (-)
spock3 spock3 coding upstream 1511448 9013877 ~ 9062826 (-)
prss12 prss12 coding upstream 2174168 9676597 ~ 9765958 (-)
mettl14 mettl14,LOC107754186,LOC107591585 coding upstream 2266101 9768530 ~ 9791976 (-)
LOC103026071 NA coding upstream 2403173 9905602 ~ 9953226 (-)
LOC111195209 NA coding upstream 2659973 10162402 ~ 10164894 (-)
G183306 NA non-coding downstream 916 7480381 ~ 7489159 (-)
G183188 NA non-coding downstream 610045 6877147 ~ 6880030 (-)
G183134 NA non-coding downstream 823533 6474990 ~ 6666542 (-)
G183158 NA non-coding downstream 853763 6592022 ~ 6636312 (-)
G183152 NA non-coding downstream 928474 6536195 ~ 6561601 (-)
G183309 NA non-coding upstream 1832 7504261 ~ 7506356 (-)
G183311 NA non-coding upstream 14324 7516753 ~ 7517491 (-)
G183299 NA non-coding upstream 16717 7519146 ~ 7520907 (-)
G183327 NA non-coding upstream 1192350 8694779 ~ 8742963 (-)
G183349 NA non-coding upstream 1290863 8793292 ~ 8811814 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other downstream 186883 7165393 ~ 7303192 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other downstream 1063492 6422103 ~ 6426583 (-)
tmsb10 NA other downstream 1082052 6352175 ~ 6408023 (-)
G183043 NA other downstream 1376983 6111370 ~ 6113092 (-)
LOC111195184 NA other downstream 2194359 5285946 ~ 5295716 (-)
G183559 NA other upstream 2152884 9655313 ~ 9657614 (-)
G183585 NA other upstream 2343393 9845822 ~ 9852381 (-)
G183880 NA other upstream 3803860 11306289 ~ 11306821 (-)
gtf2a1l NA other upstream 3900278 11402707 ~ 11411644 (-)
G184051 NA other upstream 4692783 12195212 ~ 12196658 (-)

Expression


Co-expression Network