G183559


Basic Information

Item Value
gene id G183559
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 9655313 ~ 9657614 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248668
CTAAAACATATTTCcagtgtttaatatatatttatatatttatagttatgtACATATTTCCAAAGCAATTTCTCACTGAAATGAGGCAAACATTctccaaaaaataagaaaaaaaagatcaatcaaaaagaaaaaggaaaaaaaaaggaaaaattcacAGATTCAATGAATCGATCAGCTCCCGCCAAATCACCAACGCTATTGGTTAATCTGGCAACCGaacatacactctctctctctctctctcacacacacacacaatgttctCAGGATCCGTTCAGCAGCGAGCCGTTTAATTCAGTGTTAATtcagagtaaatatatatatttttattcatatattgtgtgtatCTGTTTGCTTTGCTCAGGTCCAGTTTAATTAACAGTATCGATTAGTCAGTGACATCATGACTCCGTCAGCTAGCAGCTTGCAGACGACTCCCACCCACGTGCGTTCCACGAATCCAGAGGTTCTGAACAGCTGTTTGGTAAAAGAGTTCATTATGGAGAAGATGATGAGCGAAGAGTGAAGATCAGTGCAAATATTGAACATGAGCGATGATGGTCTGGAAAAATGGCTGCGTCCCAATTGTGTACTACACGCTAATACTGTTATTGGaacaacaccaaaaaaaaacgaaaaaaaaaaaacgtaaaatatGGGCTGGACAAATTATTGCAATCTTAATATTTAACTTAATATTTGTTTGCACAcctttaataaagaaaagaataacTGAAATCAATCTCTCAACTGGAATTTTGGaggactcttattttgaaaACTGTTCCAGGACTTTCATATTTGAAGAGTTCCTTCTCTCAACAGATATTTTAGATGCAAACACATTTCTGGCCACTTTAGAACTCTCCAAGGTTTTATTTCCATCCATTTCTTGGTGCTTTATTGAAGTAGGTTTTGGGTCATCGTCATGCCggaagacccatgacctagaacacaaacccagctttctgacactgggtTCTACTGTACATTAAGACCCAAAAGAGTCAAGGCACCCAAAGTACCAAAGGCAGCATTTTGGGAAAATGGCTGCGTCCCAGTTGTGTGCTACACACTAATACTGTTAACGgaacaaaaacagaaatcaaTTGCTTTCTGTAACTATCTGACAAACAAAAAGTTTCTTACATCTCTCAACTGGAATTTTGGAGGACTCTTGTTTTGAAAACTGTTTCAGGACTCTCATATTTGAAgagTTCCTTCTCCCAACAGCAATTTTTGGATGCAAACACCTTGCTGGTTTTGTTTCCATCCATCTCTTGGTGCTTTTTGGCTCTCAACTGCAATTTTGGaggactcttattttgaaaACTGTTCCAGAACTCTCATATTTAAAGGGTTCCTTCTCTCAACAGATATTTTTTAGATGCAAACATATTTATGGCCACTTTAGAACTCTccaaagttttgttttgttcaaaTATAAGAGTCCTGGAACAGTtttcaaaataagagtccacCAAAATTGAAGTAGGTTTTGGGTCATcgtcatgttggaagaccctaCAAGCCCTACTGTACAATAAGACCCAAAATCTTGATTATCTTTAGTAATCTTCAGATAAATTTTAATGATGCCAAGGCACCAATTGCCAAAGGCAGGAAAACAACctcaaaacatattttgttttcaaGAAACtagaatgtaaaacatgtttttagttatttgacctttgttttttgttaagtacataaaactccacacgtgttcattcatagttttgatgccttcagtgagaatctacaatgtaaatgcGCATACGCATTGAAAAAaagagtgtgtccaaacttttggcctgtgtTGTATGTCGAATTTGACTATTTTACCTCTACTTTTTGGTGTTGTtccaataaaaacaaagaaaataagcaTGTCTACAACAAAACATGTAATAGCAATAATTTTCTGAGAGAAATACTTTCTACTAATGTACACGTCACGCCTGGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248668 True 1974 TUCP 0.36 4 9655313 9657614

Neighbor

gene id symbol gene type direction distance location
spock3 spock3 coding downstream 592487 9013877 ~ 9062826 (-)
LOC111195270 NA coding downstream 2170555 7481599 ~ 7484758 (-)
ncapd3 ncapd3 coding downstream 2196583 7419349 ~ 7458730 (-)
wdr19 wdr19,LOC107591558,LOC107750430 coding downstream 2238280 7380244 ~ 7417033 (-)
LOC103041735 glrba,LOC108443987,LOC107702391,LOC107591559,LOC107655919,LOC107548353 coding downstream 2287079 7309521 ~ 7368234 (-)
prss12 prss12 coding upstream 18983 9676597 ~ 9765958 (-)
mettl14 mettl14,LOC107754186,LOC107591585 coding upstream 110916 9768530 ~ 9791976 (-)
LOC103026071 NA coding upstream 247988 9905602 ~ 9953226 (-)
LOC111195209 NA coding upstream 504788 10162402 ~ 10164894 (-)
smox smox,LOC107689473,LOC107551695,LOC107551688,LOC107692173 coding upstream 539792 10197406 ~ 10219861 (-)
G183536 NA non-coding downstream 348630 9305401 ~ 9306683 (-)
G183534 NA non-coding downstream 361606 9293019 ~ 9293707 (-)
G183532 NA non-coding downstream 371831 9281295 ~ 9283482 (-)
G183354 cpe,LOC107548348,LOC107745061 non-coding downstream 824190 8828192 ~ 8831123 (-)
G183349 NA non-coding downstream 843499 8793292 ~ 8811814 (-)
G183571 NA non-coding upstream 72457 9730071 ~ 9735156 (-)
G183594 NA non-coding upstream 207539 9865153 ~ 9868427 (-)
G183610 NA non-coding upstream 270535 9928149 ~ 9932597 (-)
G183614 NA non-coding upstream 285010 9942624 ~ 9943217 (-)
G183629 NA non-coding upstream 349069 10006683 ~ 10033241 (-)
LOC111195271 NA other downstream 2152884 7490075 ~ 7502429 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other downstream 2352121 7165393 ~ 7303192 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other downstream 3228730 6422103 ~ 6426583 (-)
tmsb10 NA other downstream 3247290 6352175 ~ 6408023 (-)
G183043 NA other downstream 3542221 6111370 ~ 6113092 (-)
G183585 NA other upstream 188208 9845822 ~ 9852381 (-)
G183880 NA other upstream 1648675 11306289 ~ 11306821 (-)
gtf2a1l NA other upstream 1745093 11402707 ~ 11411644 (-)
G184051 NA other upstream 2537598 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 3568719 13226333 ~ 13303680 (-)

Expression


Co-expression Network