G183840


Basic Information

Item Value
gene id G183840
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 10658997 ~ 10659334 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249122
cggattagtttctctttctcgttttctggctttcacagacatattcggtctctttccagcttctgccagagtgtctgtatgttagtttgtaaagaatgaaccagtagtccttgtagaactgttagaactaaaggtcggaaagcaggtcgcagttctcgcgTCtagtttgagctcagaggagctccggcacagacacgagagcaccgctattcctcctattacacctcaatgcagcgctgcagtgagtttcaagctgtaattttacttctttaaaaagatcaaaaatcaaggaaatcctacctag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249122 True 304 lncRNA 0.44 2 10658997 10659334

Neighbor

gene id symbol gene type direction distance location
mogs mogs,LOC106609973,LOC106602766 coding downstream 151602 10498845 ~ 10507395 (-)
LOC103029885 LOC108434384,LOC108435548,LOC107702154 coding downstream 179823 10474402 ~ 10479174 (-)
fbxo41 fbxo41,LOC108260496,LOC107689471 coding downstream 229589 10332167 ~ 10429408 (-)
smox smox,LOC107689473,LOC107551695,LOC107551688,LOC107692173 coding downstream 439136 10197406 ~ 10219861 (-)
LOC111195209 NA coding downstream 494103 10162402 ~ 10164894 (-)
ston1 ston1 coding upstream 753276 11412610 ~ 11426503 (-)
rps27a rps27a coding upstream 769915 11429249 ~ 11431897 (-)
ccdc88a ccdc88a coding upstream 851846 11511180 ~ 11574143 (-)
ppp4r3b ppp4r3b,smek2 coding upstream 923504 11582838 ~ 11594672 (-)
pnpt1 pnpt1,LOC106607983 coding upstream 937944 11597278 ~ 11611851 (-)
G183771 NA non-coding downstream 212225 10446561 ~ 10446772 (-)
G183769 NA non-coding downstream 225806 10430741 ~ 10433191 (-)
LOC111195213 NA non-coding downstream 395997 10254325 ~ 10263000 (-)
G183753 NA non-coding downstream 410717 10248067 ~ 10248280 (-)
G183718 NA non-coding downstream 484926 10173143 ~ 10174071 (-)
G183854 NA non-coding upstream 184867 10844201 ~ 10844599 (-)
G183857 NA non-coding upstream 296265 10955599 ~ 11187542 (-)
LOC111195215 NA non-coding upstream 497948 11157282 ~ 11177184 (-)
G183884 NA non-coding upstream 687576 11346910 ~ 11347163 (-)
G183960 NA non-coding upstream 808523 11467857 ~ 11468253 (-)
G183585 NA other downstream 806616 9845822 ~ 9852381 (-)
G183559 NA other downstream 1001383 9655313 ~ 9657614 (-)
LOC111195271 NA other downstream 3156568 7490075 ~ 7502429 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other downstream 3355805 7165393 ~ 7303192 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other downstream 4232414 6422103 ~ 6426583 (-)
G183880 NA other upstream 646955 11306289 ~ 11306821 (-)
gtf2a1l NA other upstream 743373 11402707 ~ 11411644 (-)
G184051 NA other upstream 1535878 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 2566999 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 2891798 13551132 ~ 13594753 (-)

Expression


Co-expression Network