G183880


Basic Information

Item Value
gene id G183880
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11306289 ~ 11306821 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249167
actcaaccctccacctcctcctcaggctacctgccttacggctgaagctcttgcctcattctttactgggaaagtggcagctatcagcagacagtttactgatgcgacatgtagcagtcctacatcatgctctgctgcccggtatccctctaccgaaggcgtcgctttctcctcgttcgctcctctcactgagaacgagacactggctctcctaatgcgtagccgtcctactacgtgtccacttgacccgattccttcagaccttctgcaaaccattgcacctgcaatcattccggctattactcacacgatcaatgcctctttaacatctggtgtgttcccgactgcttttaaacaagcacaggtcacaccactgcttaaaaagccttctctcaaccccgcccaggttgataactacagaccggtctcactactgccttttctttctaaaacattagaaagagcagctctcaatcaagtctctggcttcctcacccaaaatgacctcctggaccagaaccaatctggtttcA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249167 True 533 TUCP 0.50 1 11306289 11306821

Neighbor

gene id symbol gene type direction distance location
mogs mogs,LOC106609973,LOC106602766 coding downstream 798894 10498845 ~ 10507395 (-)
LOC103029885 LOC108434384,LOC108435548,LOC107702154 coding downstream 827115 10474402 ~ 10479174 (-)
fbxo41 fbxo41,LOC108260496,LOC107689471 coding downstream 876881 10332167 ~ 10429408 (-)
smox smox,LOC107689473,LOC107551695,LOC107551688,LOC107692173 coding downstream 1086428 10197406 ~ 10219861 (-)
LOC111195209 NA coding downstream 1141395 10162402 ~ 10164894 (-)
ston1 ston1 coding upstream 105789 11412610 ~ 11426503 (-)
rps27a rps27a coding upstream 122428 11429249 ~ 11431897 (-)
ccdc88a ccdc88a coding upstream 204359 11511180 ~ 11574143 (-)
ppp4r3b ppp4r3b,smek2 coding upstream 276017 11582838 ~ 11594672 (-)
pnpt1 pnpt1,LOC106607983 coding upstream 290457 11597278 ~ 11611851 (-)
G183857 NA non-coding downstream 118747 10955599 ~ 11187542 (-)
LOC111195215 NA non-coding downstream 129105 11157282 ~ 11177184 (-)
G183854 NA non-coding downstream 461690 10844201 ~ 10844599 (-)
G183840 NA non-coding downstream 646955 10658997 ~ 10659334 (-)
G183771 NA non-coding downstream 859517 10446561 ~ 10446772 (-)
G183884 NA non-coding upstream 40089 11346910 ~ 11347163 (-)
G183960 NA non-coding upstream 161036 11467857 ~ 11468253 (-)
G183963 NA non-coding upstream 169815 11476636 ~ 11479389 (-)
LOC111195221 NA non-coding upstream 1221753 12528574 ~ 12633591 (-)
G184094 NA non-coding upstream 1375674 12682495 ~ 12682697 (-)
G183585 NA other downstream 1453908 9845822 ~ 9852381 (-)
G183559 NA other downstream 1648675 9655313 ~ 9657614 (-)
LOC111195271 NA other downstream 3803860 7490075 ~ 7502429 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other downstream 4003097 7165393 ~ 7303192 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other downstream 4879706 6422103 ~ 6426583 (-)
gtf2a1l NA other upstream 95886 11402707 ~ 11411644 (-)
G184051 NA other upstream 888391 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 1919512 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 2244311 13551132 ~ 13594753 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 2681988 13988809 ~ 14040245 (-)

Expression


Co-expression Network