G183963


Basic Information

Item Value
gene id G183963
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11476636 ~ 11479389 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249288
tttcatTTGTCATTCATCTAGAAGCTTTATTGGTGCTTGTTTACATTTCACAATGCATTCCACTGAGTTTACCACGACTGTATGAAGTTATCATTCACAATTACTTGCATAACAAACAATGCTTTAAGATTTCATGTTACATATTTTTGCAGCTGTAGGTATTgggtccacagaaaaaaaacaactttaaatatcttttttttttttccttttttcttttttaagtcaaCGTCTGTAAACGTGTTCTTCCAGAGATTTTTCACTATATAGCTGCAATGAGGTGAAATGACGTCTCGATATATGCTCTTATCTTGCAAGATTCTATTAGCCTAGAAATACtcagaagcatgaagtgctatgGAGCAACTCTTTGCTAGTAGTTTAACAAGAGCCACTTGAAAGAGCGAGAAGCGTTGTGAAAGTCTACACAGTTAATCAATAAAACAGTACAATCACAGTAACACTAAATTATACCAAAAATGGACTGATACCGAGTTCCTTTTTGCCCCAAAaaagtggtaccattaaacactccctcatttaaaaaacaaaaacacatacttaaattaTTTCTGAAGTAGGTGTGGTTTGAGAAAAGAACAGAACCAGGAAATGGAATACTATTTCTTGTTTTGAGATGTGTGACAGAGTAAAGATATTATTTGCtcatttatttcagtcagtcagtgtctCAAGAAAAACATGTAGTGGCTCGAATGGTTTAACAACTTCACCGTAGTGACCTTTTTGGGcggaaaaggaaaataaaacagagtgggggagaaaaagagagaacaaaCCGATAAGCAGTTTTCAACAGGGTGTGAGGGATTCAgtaggagagaaaaagagaaagagatgttTGAAAATAACAGTGTAGAGGAGGACACCACACCCTGATCCTCAGAGCAACCCCACCAGCCTTAAACTCGACAGACTCCTTCCAGCTCAACGGCCTCTATACTCTTCACTCAGCCTTCTTCTTAGCGCCAGGAATTTTAGCCTGGATCTTTCCAACAACGTCCTTGACCTGGTTGTTTATCAGGGCAACGTAATGGTCGATTTGCGTCTGTAGGAGATGAAGCAGAGATAAAGGACACATTTTCTTGCTCTGTTTGAAGCATAACTACAATCACATCAATACTACAACCAGTAAACAATACATGAAAATCACAAACTAAAGGTACAAACTATCAGTTTAGAATGACACCAGCATTCTATTAATATAAGTAAAATTACAAAGTTTCAAAGTTCTATTAGTGTGAATTATTTGAAGAGGgattaaaacaacacaaaacgtGCTATGAGAAAATATCTAAAGGGATGGGAGGAAATATTTGCATAGGTTCTACGCCTAACTTACTGGCACACAGTCACTGTTCAGTTCTCTTCTAAAACAACAAGCTAGTACACTCAAGTCAACGTCAATAAAACGCTGAACAAGTACCTGCTGCAGATGAACTTGCAAAAATGGAATTTGCAGTTCAAGAACCTTTTGCAGGTGAGTTTGCAAAAAGGGGTCGTTCTTAAAACAAGGAGAGTTAAAATAGTTAAGCCTTTTTTAAGACTGTAAAAAGAAGGTTGAGTATCTCCCTAGAAAGAGGGAGCTAGATGCACATTTCACAGGCTGGAAATACTGTTGAATACACACAATTCTGATGAGATCGCTTAATAAGATCAATGAATAAGATGCCTGACTGGTGTAGAAGAGTGCAGATGTTGTCGTTTCGTGATTGATGTTAGGGCAGGCTTATCCTGCAATTCCCCCCAAGAGAGAAATCCATTCTTTGGCTGTCATTCACTTTGAGCTGGTCTACGTTCTCAAATAAACTGCCGTGGCCAGCCGAAAAATTTACAGAATGATGAAGCATAGCTTGTATTCTTCTGTGTTCTTTTATATTAAGAAATTAGGAGCCTGACTGTCAAATTAAATTAGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249288 True 1939 lncRNA 0.37 2 11476636 11479389

Neighbor

gene id symbol gene type direction distance location
rps27a rps27a coding downstream 44739 11429249 ~ 11431897 (-)
ston1 ston1 coding downstream 50133 11412610 ~ 11426503 (-)
mogs mogs,LOC106609973,LOC106602766 coding downstream 969241 10498845 ~ 10507395 (-)
LOC103029885 LOC108434384,LOC108435548,LOC107702154 coding downstream 997462 10474402 ~ 10479174 (-)
fbxo41 fbxo41,LOC108260496,LOC107689471 coding downstream 1047228 10332167 ~ 10429408 (-)
ccdc88a ccdc88a coding upstream 31791 11511180 ~ 11574143 (-)
ppp4r3b ppp4r3b,smek2 coding upstream 103449 11582838 ~ 11594672 (-)
pnpt1 pnpt1,LOC106607983 coding upstream 117889 11597278 ~ 11611851 (-)
cfap36 cfap36 coding upstream 134267 11613656 ~ 11627474 (-)
LOC103040758 LOC108427447 coding upstream 193704 11673093 ~ 12525320 (-)
G183960 NA non-coding downstream 8383 11467857 ~ 11468253 (-)
G183884 NA non-coding downstream 129473 11346910 ~ 11347163 (-)
G183857 NA non-coding downstream 289094 10955599 ~ 11187542 (-)
LOC111195215 NA non-coding downstream 299452 11157282 ~ 11177184 (-)
G183854 NA non-coding downstream 632037 10844201 ~ 10844599 (-)
LOC111195221 NA non-coding upstream 1049185 12528574 ~ 12633591 (-)
G184094 NA non-coding upstream 1203106 12682495 ~ 12682697 (-)
G184150 NA non-coding upstream 1313393 12792782 ~ 12794964 (-)
G184152 NA non-coding upstream 1315855 12795244 ~ 12795519 (-)
LOC111195223 NA non-coding upstream 1326892 12806281 ~ 12812440 (-)
gtf2a1l NA other downstream 64992 11402707 ~ 11411644 (-)
G183880 NA other downstream 169815 11306289 ~ 11306821 (-)
G183585 NA other downstream 1624255 9845822 ~ 9852381 (-)
G183559 NA other downstream 1819022 9655313 ~ 9657614 (-)
LOC111195271 NA other downstream 3974207 7490075 ~ 7502429 (-)
G184051 NA other upstream 715823 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 1746944 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 2071743 13551132 ~ 13594753 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 2509420 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 2584255 14063644 ~ 14116456 (-)

Expression


Co-expression Network