LOC111195223


Basic Information

Item Value
gene id LOC111195223
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 12806281 ~ 12812440 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249521
GAGGTGGACAGTGTGCAGTCTGTAGCTTTAAGCAGTGTGGAGAGAAGAGCGCAGGTGAAGCTCgttagtgagagaaagagagagagagagagagagagagagagagagagaacaacatTAGCAGTAGCGCCGCGGGACGAAGCAgcagGTGCTGGTAACGAGGGAGATGAGGGACtggaggatgaagaggagaCAAGAAATTGAGGATGAATGCAGTGAGGAAGATGGGCAGGATGTAGAAGAGATGTGAagtgaagaggaggaagagcaaGACAACAGCGAGTCCATGGATGAAGACTACACGCCcaaggaggaggatgaggaagaggagaaagCTGAATAACATGTCATTCCCTGTCATAGCTAAGCCTGCACGGTGCTTGATTTCTGATAAAAAAGAACAGCAGACACAAGATGCCAACAGAGCAATTCCGggcaaagagaagagaagagaagagcagTGAATTCAGGTCCTGAAACACCAGCCAGCGTTCTCAAAAACTAAGGTTCTACAAAGGGATTTTTAAATGGGATGTGGGTGTGAAGAACTTTTTACCCTGTGCCTAACAACTTTCAGGACCTGATGGAGCAAATCAAGATCTAATCATATGGAACATCATGCTTATGCACTTTCTGAAACCCTGCTGATTAAGTGTCCT
>TU249527
GAGGTGGACAGTGTGCAGTCTGTAGCTTTAAGCAGTGTGGAGAGAAGAGCGCAGGTGAAGCTCgttagtgagagaaagagagagagagagagagagagagagagagagagaacaacatTAGCAGTAGCGCCGCGGGACGAAGCAgcagGTGCTGGTAACGAGGGAGATGAGGGACtggaggatgaagaggagaCAAGAAATTGAGGATGAATGCAGTGAGGAAGATGGGCAGGATGTAGAAGAGATGTGAagtgaagaggaggaagagcaaGACAACAGCGAGTCCATGGATGAAGACTACACGCCcaaggaggaggatgaggaagaggagaaagCTGAATAACATGTCATTCCCTGTCATAGCTAAGCCTGCACGGTGCTTGATTTCTGATAAAAAAGAACAGCAGACACAAGATGCCAACAGAGCAATTCCGggcaaagagaagagaagagaagagcagTGAATTCAGGTCCTGAAACACCAGCCAGCGTTCTCAAAAACTAAGGTTCTACAAAGGGATTTTTAAATGGGATGTGGGTGTGAAGAACTTTTTACCCTGGTAAAGAACCTTTATTTCAAGtcaagagaaaattaaagaatgtGACTTAAAGTGTTCTTAAAGTTACTGTGTAGCTTATCTTTATTGTTTCTTATCTTCAAGTGCCTAACAACTTTCAGGACCTGATGGAGCAAATCAAGATCTAATCATATGGAACATCATGCTTATGCACTTTCTGAAACCCTGCTGATTAAGTGTCCT
>TU249529
GAGGTGGACAGTGTGCAGTCTGTAGCTTTAAGCAGTGTGGAGAGAAGAGCGCAGGTGAAGCTCgttagtgagagagagagaacaacatTAGCAGTAGCGCCGCGGGACGAAGCAgcagGTGCTGGTAACGAGGGAGATGAGGGACtggaggatgaagaggagaCAAGAAATTGAGGATGAATGCAGTGAGGAAGATGGGCAGGATGTAGAAGAGATGTGAagtgaagaggaggaagagcaaGACAACAGCGAGTCCATGGATGAAGACTACACGCCcaaggaggaggatgaggaagaggagaaagCTGAATAACATGTCATTCCCTGTCATAGCTAAGCCTGCACGGTGCTTGATTTCTGATAAAAAAGAACAGCAGACACAAGATGCCAACAGAGCAATTCCGggcaaagagaagagaagagaagagcagTGAATTCAGGTCCTGAAACACCAGCCAGCGTTCTCAAAAACTAAGGTTCTACAAAGGGATTTTTAAATGGGATGTGGGTGTGAAGAACTTTTTACCCTGTGCCTAACAACTTTCAGGACCTGATGGAGCAAATCAAGATCTAATCATATGGAACATCATGCTTATGCACTTTCTGAAACCCTGCTGATTAAGTGTCCT
>XR_002651535.1
GAGGTGGACAGTGTGCAGTCTGTAGCTTTAAGCAGTGTGGAGAGAAGAGCGCAGGTGAAGCTCgttagtgagagaaagagagagagagagagagagagagagagagagagaacaacatTAGCAGTAGCGCCGCGGGACGAAGCAgcagGTGCTGGTAACGAGGGAGATGAGGGACtggaggatgaagaggagaCAAGAAATTGAGGATGAATGCAGTGAGGAAGATGGGCAGGATGTAGAAGAGATGTGAagtgaagaggaggaagagcaaGACAACAGCGAGTCCATGGATGAAGACTACACGCCcaaggaggaggatgaggaagaggagaaagCTGAATAACATGTCATTCCCTGTCATAGCTAAGCCTGCACGGTGCTTGATTTCTGATAAAAAAGAACAGCAGACACAAGATGCCAACAGAGCAATTCCGggcaaagagaagagaagagaagagcagTGAATTCAGGTCCTGAAACACCAGCCAGCGTTCTCAAAAACTAAGGTTCTACAAAGGGATTTTTAAATGGGATGTGGGTGTGAAGAACTTTTTACCCTGTGCCTAACAACTTTCAGGACCTGATGGAGCAAATCAAGATCTAATCATATGGAACATCATGCTTATGCACTTTCTGAAACCCTGCTGATTAAGTGTCCTAAAAGAAACAAAGTAAAGAGAAACGTTTTTGCAa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249521 False 659 lncRNA 0.47 5 12806315 12812440
TU249527 True 761 lncRNA 0.44 4 12806315 12812440
TU249529 False 629 lncRNA 0.47 6 12806315 12812440
XR_002651535.1 False 693 lncRNA 0.46 5 12806281 12812440

Neighbor

gene id symbol gene type direction distance location
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding downstream 45350 12707652 ~ 12760931 (-)
LOC103040758 LOC108427447 coding downstream 280961 11673093 ~ 12525320 (-)
cfap36 cfap36 coding downstream 1178807 11613656 ~ 11627474 (-)
pnpt1 pnpt1,LOC106607983 coding downstream 1194430 11597278 ~ 11611851 (-)
ppp4r3b ppp4r3b,smek2 coding downstream 1211609 11582838 ~ 11594672 (-)
mpdz mpdz coding upstream 4140 12816580 ~ 12879020 (-)
LOC103027614 LOC103027614 coding upstream 987081 13799521 ~ 13807329 (-)
LOC103028152 NA coding upstream 1000958 13813398 ~ 13827899 (-)
drap1 drap1,LOC106608686 coding upstream 1238290 14050730 ~ 14058635 (-)
lurap1l lurap1l coding upstream 1375236 14187676 ~ 14198597 (-)
G184152 NA non-coding downstream 10762 12795244 ~ 12795519 (-)
G184150 NA non-coding downstream 11317 12792782 ~ 12794964 (-)
G184094 NA non-coding downstream 123584 12682495 ~ 12682697 (-)
LOC111195221 NA non-coding downstream 172690 12528574 ~ 12633591 (-)
G183963 NA non-coding downstream 1326892 11476636 ~ 11479389 (-)
G184224 NA non-coding upstream 485295 13297735 ~ 13298115 (-)
G184244 NA non-coding upstream 705239 13517679 ~ 13576322 (-)
G184250 LOC108427427 non-coding upstream 741248 13553688 ~ 13559115 (-)
LOC111195158 NA non-coding upstream 790836 13603276 ~ 13605583 (-)
LOC111195153 NA non-coding upstream 803243 13615683 ~ 13618625 (-)
G184051 NA other downstream 609623 12195212 ~ 12196658 (-)
gtf2a1l NA other downstream 1394637 11402707 ~ 11411644 (-)
G183880 NA other downstream 1499460 11306289 ~ 11306821 (-)
G183585 NA other downstream 2953900 9845822 ~ 9852381 (-)
G183559 NA other downstream 3148667 9655313 ~ 9657614 (-)
LOC111195225 NA other upstream 413893 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 738692 13551132 ~ 13594753 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 1176369 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 1251204 14063644 ~ 14116456 (-)
trnas-gcu_5 NA other upstream 1277266 14089706 ~ 14089787 (-)

Expression


Co-expression Network