G184250 (LOC108427427)


Basic Information

Item Value
gene id G184250
gene name LOC108427427
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13553688 ~ 13559115 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249677
ACCTGATCCAGTGTAGTCTGAGAGACAGAGTAGTCCTCCACTCCCAGTGCATGCTGGTTTTTGCTGAACTGGTTGAACATGTGTGAGAGCGCTCCCTCTGTGTATGGGATCTGGTACTGcagtgtgttgtggtgtttctCCTTCAGGACGCTGCCGGGAAACGAGCGACTCACAAAATCCTCCACAGCGCTCAGATCAGTCGCACCACCCTGCACACGCACAATCACCGTGTAACCATCTCCAAAcctGCCTTTGAGGTTTTTCGAAGCAGTTTGCTGGAAGGGTGCCTATTAGGACTGCTTATGTTTGACTGTGTTCACTTTTCTATTGACCCAGTGCACCTGTACAAGAAGGCCAAAGCTAAAGGTGTGGTTGGAAAATGGGTTATGGATGATTTTACTTTGAACTTTTACTTTGAGTGCACTTGTACACca

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249677 True 434 lncRNA 0.48 2 13553688 13559115

Neighbor

gene id symbol gene type direction distance location
mpdz mpdz coding downstream 674668 12816580 ~ 12879020 (-)
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding downstream 792757 12707652 ~ 12760931 (-)
LOC103040758 LOC108427447 coding downstream 1028368 11673093 ~ 12525320 (-)
cfap36 cfap36 coding downstream 1926214 11613656 ~ 11627474 (-)
pnpt1 pnpt1,LOC106607983 coding downstream 1941837 11597278 ~ 11611851 (-)
LOC103027614 LOC103027614 coding upstream 240406 13799521 ~ 13807329 (-)
LOC103028152 NA coding upstream 254283 13813398 ~ 13827899 (-)
drap1 drap1,LOC106608686 coding upstream 491615 14050730 ~ 14058635 (-)
lurap1l lurap1l coding upstream 628561 14187676 ~ 14198597 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding upstream 641108 14200223 ~ 14207686 (-)
G184224 NA non-coding downstream 255573 13297735 ~ 13298115 (-)
LOC111195223 NA non-coding downstream 741248 12806281 ~ 12812440 (-)
G184152 NA non-coding downstream 758169 12795244 ~ 12795519 (-)
G184150 NA non-coding downstream 758724 12792782 ~ 12794964 (-)
G184094 NA non-coding downstream 870991 12682495 ~ 12682697 (-)
LOC111195158 NA non-coding upstream 44161 13603276 ~ 13605583 (-)
LOC111195153 NA non-coding upstream 56568 13615683 ~ 13618625 (-)
G184256 NA non-coding upstream 60517 13619632 ~ 13619836 (-)
G184330 NA non-coding upstream 117222 13676337 ~ 13677778 (-)
G184338 NA non-coding upstream 165643 13724758 ~ 13729943 (-)
LOC111195225 NA other downstream 250008 13226333 ~ 13303680 (-)
G184051 NA other downstream 1357030 12195212 ~ 12196658 (-)
gtf2a1l NA other downstream 2142044 11402707 ~ 11411644 (-)
G183880 NA other downstream 2246867 11306289 ~ 11306821 (-)
G183585 NA other downstream 3701307 9845822 ~ 9852381 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 429694 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 504529 14063644 ~ 14116456 (-)
trnas-gcu_5 NA other upstream 530591 14089706 ~ 14089787 (-)
trnas-gcu_6 NA other upstream 532394 14091509 ~ 14091590 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other upstream 1750394 15309509 ~ 15340580 (-)

Expression


Co-expression Network