G184902 (gatb)


Basic Information

Item Value
gene id G184902
gene name gatb
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16097011 ~ 16098492 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250543
TGTAGAAGGTCACGCGTGAGCTGGAGAACAGTTTAGAGTTCGAGTGGATCTGTGCATGGATCTCCAGCCCAACGACCCCACACAGCTGAGGGGAAATACGGTTACTCTGAGTGCTGGGCTGAATCTGTCGTGCGGATCCAGATGTGCACAGACTGCTGATCGAGGGGTTACACAGCTGAACACCGCAGACATGTCTAAATCTCATAAATCCACACAATCTCTGCACTACTGCGCTGTGTCCCGATGAGGAGGCAGCCattgctgagtgtttataacgCGGGGAGATCTGGGAAACCGAGTTCTTAGCAGCTCTGTGGAAGAGCGACAAGCGCAAGAGCGAAGTTCCTgagaactacatttcccacaatgcaacaGTACCACCCCGCGTATTGACGCATTACGTCGGGATCCCACGTGCGAGAACC

Function

symbol description
gatb Predicted to enable glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Predicted to be involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be part of glutamyl-tRNA(Gln) amidotransferase complex. Predicted to be active in mitochondrion. Is expressed in serotonergic neurons. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 41. Orthologous to human GATB (glutamyl-tRNA amidotransferase subunit B).

NR:

description
glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250543 True 425 lncRNA 0.53 2 16097011 16098492

Neighbor

gene id symbol gene type direction distance location
dctpp1 dctpp1 coding downstream 691 16095030 ~ 16096320 (-)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 coding downstream 329231 15763186 ~ 15767780 (-)
pds5a pds5a,LOC107757607 coding downstream 389471 15684816 ~ 15707540 (-)
ugdh ugdh,LOC107757604 coding downstream 437445 15645138 ~ 15659566 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding downstream 459919 15632254 ~ 15637092 (-)
fam160a1 fam160a1 coding upstream 21182 16119674 ~ 16141270 (-)
rps3a rps3a,LOC107695588 coding upstream 81578 16180070 ~ 16184812 (-)
mab21l2 mab21l2 coding upstream 253082 16351574 ~ 16356009 (-)
trnaw-cca_46 NA coding upstream 478331 16576823 ~ 16576895 (-)
trnar-ucg_6 NA coding upstream 478433 16576925 ~ 16576997 (-)
LOC111195239 NA non-coding downstream 3735 15992016 ~ 16093276 (-)
G184898 NA non-coding downstream 82485 16014017 ~ 16014526 (-)
LOC111195237 NA non-coding downstream 130598 15941098 ~ 15966413 (-)
G184881 NA non-coding downstream 150553 15891780 ~ 15946458 (-)
G184874 NA non-coding downstream 324916 15771704 ~ 15772095 (-)
LOC111195238 NA non-coding upstream 355393 16453885 ~ 16462187 (-)
G184939 NA non-coding upstream 364186 16462678 ~ 16468266 (-)
G184944 NA non-coding upstream 396055 16494547 ~ 16541739 (-)
G184945 NA non-coding upstream 396238 16494730 ~ 16511182 (-)
G184946 NA non-coding upstream 399867 16498359 ~ 16501566 (-)
smim14 smim14 other downstream 425057 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 715803 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 756431 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2005421 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 2007224 14089706 ~ 14089787 (-)
lrat lrat other upstream 799686 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1131593 17230085 ~ 17241027 (-)
G185295 NA other upstream 1153775 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 1197009 17295501 ~ 17300782 (-)
nutm1 NA other upstream 1214878 17313370 ~ 17328889 (-)

Expression


Co-expression Network