G184944


Basic Information

Item Value
gene id G184944
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16494547 ~ 16541739 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250603
GTGTTTCCAATCCGATTTAATTACATCATCATCCTGCAGCATCACTACACTCAGTCTGCTCTGTGCCGGTACAGAGAGCCAGACAGACCCAGAACAGAgggagaaattaaaaaaaaaaaaaaacgaaaaagaaagaaaagaggagaaaatctGTCAGAACGAAAGAAAAACGAGAGAGTAatgtttacacacaaaaaattaaaacacaaaacagtaaaaattacAAACCAGTTTACTGCTGTTTAGAGTAACGGAGAGGGTTTAGTCAAAAgatacattacaaaaaaaaaagaaaaaagaaaaaatcccatcatcatcataatcatcatcatcatcgccgCCGTCTTCTTCATCATAATCAGTCTGTGTTCATAATAAAAAGCTCTTGGCTCTTATTGTTCATTTATTCTGATAGGAGAAAAACATTCCCAGCTTTCAgctgagagacacacacacacacacacacacacacacttacacttccATCAACACTGCACCACCTTCAACACTGAACCACAACCAGCACCACCCTTAACACTACACCATCAGCACCACGCCATGCCCTTAAAGCCACAATAAACCCCAGGCTGCACTCGAAAGAGCCCTCCACCCCACCCTAACCATCGCTCTTCCCTCACCACCGCCCTTACGCCACCTTTAACCCCTCCGCtgtgtgtgggcgagcattatcctgctgaaagaaCTGTTAGTGTGGACTGTGCTGTGAGTGGTTTTGTTGTTTACCAGCAGTTGGGGCAGTGTGTCGCTCCACAGCAAAGGCACAGCGCCCTCAACACCGCACCAGAGTGTGTGCTCAGGTCTCCCATCCAGAGTGATTgcagttattattaatatcagcattattattattattattattaatattactaatagTCCTTCATTATTtgatatatacacatatttgcAATGGGCTGCTTTGCTGTGTGTCAGTTtatcacactgtgtgtgtatgtgtgttagagagagagagagagagagagagagagagagagagagagagaaagagagtgtgtttttttactgtaagtacacttgaaaataaaatatgattttttttttccccggaTAGAATATACATGAAACCCTTCACGTCACTCATTAacacggacggacggacggacacacacacacacatacac
>TU250604
taaaaaaattatgcaaaTGAGCCAATCCCACAGTTTCATTTTAACATACACCCATCAAGCATAACAGAAacatccttgtttctacacccattttttttattttttcagctccaGAATGAGCATCGCTCTCTGAATTTAcctctacaaggtggagcagctaggtACAGtcacttgcaaaagtattcaaaccCCTTCACACGTTTCTCCCCTACAATTATAaacttaaatgttattttattgtgatttttttaagtgatagacaaacacaaagtagcacataagtGTAAACTAGAATGAAGATGAAATTTTAAACAatgaattttaatcaaataaaaatcttacaaaagtattcagccccctttacacTGAACCCCCTAAATACTATACAAGtaatttaattagttaatagagtccagctgttctgtgaaggcctcagtgttttattagataacactagtgaacaaacagcataatGAAGATCAAGCAACTCACCAGACAGTTTAGAGATAAACTTGCTTATCttgtttaaagcagggttaggttataaaaacacatcccaAGATTTGATCCTCCCAAGGAgtactgttcaatccatcatccaaaactggaaaaaagtactctacaactgtttctacaaagctaccaagacatggccatggtCCACCAAatctgacagatcaagcaaggagaaCACTGGTcaaagaagcagccaagaggcccatggtcactctggaggagctgcagaaatccacagctcaggtgaatcatgagaatctgtccacaggacaactataagttgtGCGCTGCACAAATCTAGACTTAATGAAAGAGTGGCAAGAGcaaaaccattgttgaaagaaagtttgccacaagccatgtagagaacaaagcaaacaaagttgaacttgaactttttggcctagaTGCAAAGCGCCCTGAACACACCATAGCCAGGGTCTGTATATGATTGAAAAGATAACTGCGTTAacgggtgtagaaacaaggaggtggtcaatGTTGTGCTGCATGGATCATTAACTTTTACACACAAACCAAAACACAACGAAACCAGCCGTGTTTCCAATCCGATTTAATTACATCATCATCCTGCAGCATCACTACACTCAGTCTGCTCTGTGCCGGTACAGAGAGCCAGACAGACCCAGAACAGAgggagaaattaaaaaaaaaaaaaaacgaaaaagaaagaaaagaggagaaaatctGTCAGAACGAAAGAAAAACGAGAGAGTAatgtttacacacaaaaaattaaaacacaaaacagtaaaaattacAAACCAGTTTACTGCTGTTTAGAGTAACGGAGAGGGTTTAGTCAAAAgatacattacaaaaaaaaaagaaaaaagaaaaaatcccatcatcatcataatcatcatcatcatcgccgCCGTCTTCTTCATCATAATCAGTCTGTGTTCATAATAAAAAGCTCTTGGCTCTTATTGTTCATTTATTCTGATAGGAGAAAAACATTCCCAGCTTTCAgctgagagacacacacacacacacacacacacacacttacacttccATCAACACTGCACCACCTTCAACACTGAACCACAACCAGCACCACCCTTAACACTACACCATCAGCACCACGCCATGCCCTTAAAGCCACAATAAACCCCAGGCTGCACTCGAAAGAGCCCTCCACCCCACCCTAACCATCGCTCTTCCCTCACCACCGCCCTTACGCCACCTTTAACCCCTCCGCtgtgtgtgggcgagcattatcctgctgaaagaaCTGTTAGTGTGGACTGTGCTGTGAGTGGTTTTGTTGTTTACCAGCAGTTGGGGCAGTGTGTCGCTCCACAGCAAAGGCACAGCGCCCTCAACACCGCACCAGAGTGTGTGCTCAGGTCTCCCATCCAGAGTGATTgcagttattattaatatcagcattattattattattattattaatattactaatagTCCTTCATTATTtgatatatacacatatttgcAATGGGCTGCTTTGCTGTGTGTCAGTTtatcacactgtgtgtgtatgtgtgttagagagagagagagagagagagagagagagagagagagagagaaagagagtgtgtttttttactgtaagtacacttgaaaataaaatatgattttttttttccccggaTAGAATATACATGAAACCCTTCACGTCACTCATTAacacggacggacggacacacacacacatacactctctcaGAGTCCCTCTGACATCacctgcacgcacacacacacacactttcattaGGTATAGTAGGTGTTCGGCCGCTGGAGGTTAGTAGTGTTCTACAGAATTTGGAAATTAGAGCTGCTCTATTGTCAGTTGCATAATTCCTCTAAATTTGAAGGATGCTGTTGCGCACACTACTGCTGGGGGGCGCTATAAAGAGCCCATATCTTACAGCTctctttcatttaatttattttgttgagCTTCACTTTATTCACCATAATTTTATGTTCCAAAATCTGTCATCATTCATTTTTGCACAAATCAGCTGGTCTACTTATTGGCCTACTTCAAAAAGAGCAGCAGTATAAACGGGTGGTTGCTGCGACCCTGTTAGGTGGATGGTAAGGTATTGCTGAGTGATCAGCTATATCAGTCATAATTCATCATTTACAGTTAGACATTCAGTATCTGTCATTATACCTTTACCACTAATATATGTAAATCAGCTGTCTTCTAATTGGTCTATTCCAAAAATAAAAGGTGGTTGTTGTGACTTTATTAAGTagatgctagggtgttgctaaggtaCCTTGTTTCTGTACTCCAGAGTGATAGCATTACTAAGGGGGTGGGAATAAACTGTGGTAGACTAAACTTGCGTAATGAAACCGcgacataaatacatttttattatattaatgataAATCTAATTAATATGTAAATTAGACCTTTACTTCTTTACTTTAGAGGATTTTATCCCACACAAGGGATAAAGGTACTTTTTTCCcattattattgtcattatcGAGGGGGCTGGGGCTAAACTGTGGCAGACTGCATATGCAAAACTAAAtaagttaatattaatattaattttattatattaatgataAGTCTAATTAATATGTAAATTAGACCATGTTTAGGGAGGTTAAAGAGCTCATAACCCACAGCTCTCTTATATCATATAGCTTCTGCGCCAAAGCACTAAAATAATCACAATTCATTTCTTGACCAACTTGGTTAAATACAACATTTGTTATCGTACTTTTAAGACTGATCTATGTAAAGGACctgtgttctgattggcctgtatgaaaaaaaaacactctctcAACTCAAACACTGCactgctatgttgttgctaggtggatgctaggctgttgctaggAGATAGCTTGATAAAAACAACCATTTAAGATGCCATAGCAGACAAGTGGCTGCTCtggtatcctaggtggttgcaatggtatctTAGTTAGTAACTAGCTGACTTAATACTGCACACTTTCCACACTTCCACAGAGCAaccatgattattattattattattattattaatattattattattaattatttgcatGATATGGGCTCTCGAATTGGGAGATAAAGCCAGGAACACGGCGCGCTGTCAGTCAGAACTCAAGAGCCATGAGggaccccacacacacacataccacatacaccacacacacacacacacacacctcatagACCCCCTTGTTTTACCACACTACGGAAGACGTGTGGTTGTGAGGGGGttgttctattttttcttttttttttttagcgaaGGCCGGACCGCGGTGCGAACGAGTCCGGCGCTTTTCCGCCGACAGCACTAAAGAACGAGAGCAGGTGTGCATCCCTTCCCTTATATGACCAAACAGTGGAGGacacaggaggaggaggagaggaggtaAGGTAGGACAGACAGATGTTAACAGAACAGAGTATCAGgtaagcagacagacagacaggtagagtAGAATCCCGTGCACCCCTCTGCCGCCTCTGCTGTCGTTTCTGCTGTCAGACACTGTTGTATGTACTCACACAGCGGGAACAGGAGATGGGTGGGAGGGGTTACAGGTGAGACAAGCACAGGTGTAGGAATCACATGTCCAGTCAGTTCTGGAGGAGGAGACAGACGACGGGAAAGGAGAGCAGTCCGCTGCGTGTCACGTGTTCCGTTCCGTTTTCGGGAAGTCCGCTCCACTGCCGGAGAAGATGTGCAATATTTGGATCAGAAGATGTCGGGACAGTTCTCCCAGGTGCCTTGCTCCTTCGTCTCCCAGTATCCTCCTTTGTAGATGTGTGTGGGCTCTCCAGTCGCCTCGTCCACCACCTGCTCGAACCACAAGGCCGTGTAGTTGTCCTGCGGAGCGC
>TU250605
GTGTTTCCAATCCGATTTAATTACATCATCATCCTGCAGCATCACTACACTCAGTCTGCTCTGTGCCGGTACAGAGAGCCAGACAGACCCAGAACAGAgggagaaattaaaaaaaaaaaaaaacgaaaaagaaagaaaagaggagaaaatctGTCAGAACGAAAGAAAAACGAGAGAGTAatgtttacacacaaaaaattaaaacacaaaacagtaaaaattacAAACCAGTTTACTGCTGTTTAGAGTAACGGAGAGGGTTTAGTCAAAAgatacattacaaaaaaaaaagaaaaaagaaaaaatcccatcatcatcataatcatcatcatcatcgccgCCGTCTTCTTCATCATAATCAGTCTGTGTTCATAATAAAAAGCTCTTGGCTCTTATTGTTCATTTATTCTGATAGGAGAAAAACATTCCCAGCTTTCAgctgagagacacacacacacacacacacacacacacttacacttccATCAACACTGCACCACCTTCAACACTGAACCACAACCAGCACCACCCTTAACACTACACCATCAGCACCACGCCATGCCCTTAAAGCCACAATAAACCCCAGGCTGCACTCGAAAGAGCCCTCCACCCCACCCTAACCATCGCTCTTCCCTCACCACCGCCCTTACGCCACCTTTAACCCCTCCGCtgtgtgtgggcgagcattatcctgctgaaagaaCTGTTAGTGTGGACTGTGCTGTGAGTGGTTTTGTTGTTTACCAGCAGTTGGGGCAGTGTGTCGCTCCACAGCAAAGGCACAGCGCCCTCAACACCGCACCAGAGTGTGTGCTCAGGTCTCCCATCCAGAGTGATTgcagttattattaatatcagcattattattattattattattaatattactaatagTCCTTCATTATTtgatatatacacatatttgcAATGGGCTGCTTTGCTGTGTGTCAGTTtatcacactgtgtgtgtatgtgtgttagagagagagagagagagagagagagagagagagagagagagaaagagagtgtgtttttttactgtaagtacacttgaaaataaaatatgattttttttttccccggaTAGAATATACATGAAACCCTTCACGTCACTCATTAacacggacggacggacggacacacacacacacacacactctcac
>TU250607
TATCAGCATAAATACTcattattattattattattattaatattactaatagTCCTTCATTATTtgatatatacacatatttgcAATGGGCTGCTTTGCTGTGTGTCAGTTtatcacactgtgtgtgtatgtgtgttagagagagagagagagagagagagagagagagagagagagagaaagagagtgtgtttttttactgtaagtacacttgaaaataaaatatgattttttttttccccggaTAGAATATACATGAAACCCTTCACGTCACTCATTAacacggacggacggacggacacactgacacacacatacacacacacatacactctctcaGAGTCCCTCTGACATCacctgcacgcacacacacacacactttcattaGGTATAGTAGGTGTTCGGCCGCTGGAGGTTAGTAGTGTTCTACAGAATTTGGAAATTAGAGCTGCTCTATTGTCAGTTGCATAATTCCTCTAAATTTGAAGGATGCTGTTGCGCACACTACTGCTGGGGGGCGCTATAAAGAGCCCATATCTTACAGCTctctttcatttaatttattttgttgagCTTCACTTTATTCACCATAATTTTATGTTCCAAAATCTGTCATCATTCATTTTTGCACAAATCAGCTGGTCTACTTATTGGCCTACTTCAAAAAGAGCAGCAGTATAAACGGGTGGTTGCTGCGACCCTGTTAGGTGGATGGTAAGGTATTGCTGAGTGATCAGCTATATCAGTCATAATTCATCATTTACAGTTAGACATTCAGTATCTGTCATTATACCTTTACCACTAATATATGTAAATCAGCTGTCTTCTAATTGGTCTATTCCAAAAATAAAAGGTGGTTGTTGTGACTTTATTAAGTagatgctagggtgttgctaaggtaCCTTGTTTCTGTACTCCAGAGTGATAGCATTACTAAGGGGGTGGGAATAAACTGTGGTAGACTAAACTTGCGTAATGAAACCGcgacataaatacatttttattatattaatgataAATCTAATTAATATGTAAATTAGACCTTTACTTCTTTACTTTAGAGGATTTTATCCCACACAAGGGATAAAGGTACTTTTTTCCcattattattgtcattatcGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250603 False 1160 lncRNA 0.42 2 16498274 16532699
TU250604 True 4382 lncRNA 0.41 2 16529372 16533773
TU250605 False 1166 lncRNA 0.42 2 16494547 16532699
TU250607 False 1122 lncRNA 0.37 2 16530736 16541739

Neighbor

gene id symbol gene type direction distance location
mab21l2 mab21l2 coding downstream 138538 16351574 ~ 16356009 (-)
rps3a rps3a,LOC107695588 coding downstream 309735 16180070 ~ 16184812 (-)
fam160a1 fam160a1 coding downstream 353277 16119674 ~ 16141270 (-)
dctpp1 dctpp1 coding downstream 398227 16095030 ~ 16096320 (-)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 coding downstream 726767 15763186 ~ 15767780 (-)
trnaw-cca_46 NA coding upstream 35084 16576823 ~ 16576895 (-)
trnar-ucg_6 NA coding upstream 35186 16576925 ~ 16576997 (-)
trnar-ccg_7 NA coding upstream 35289 16577028 ~ 16577100 (-)
trnar-ucu_5 NA coding upstream 35391 16577130 ~ 16577202 (-)
trnar-ucu_6 NA coding upstream 35493 16577232 ~ 16577303 (-)
G184939 NA non-coding downstream 26281 16462678 ~ 16468266 (-)
LOC111195238 NA non-coding downstream 32360 16453885 ~ 16462187 (-)
G184902 gatb non-coding downstream 396055 16097011 ~ 16098492 (-)
LOC111195239 NA non-coding downstream 401271 15992016 ~ 16093276 (-)
G184898 NA non-coding downstream 480021 16014017 ~ 16014526 (-)
G184957 NA non-coding upstream 12260 16553999 ~ 16554312 (-)
G184958 NA non-coding upstream 13036 16554775 ~ 16554991 (-)
G184959 NA non-coding upstream 13515 16555254 ~ 16555678 (-)
G184962 NA non-coding upstream 20650 16562389 ~ 16563448 (-)
G184964 NA non-coding upstream 26809 16568548 ~ 16631423 (-)
smim14 smim14 other downstream 822593 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1113339 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1153967 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2402957 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 2404760 14089706 ~ 14089787 (-)
lrat lrat other upstream 356439 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 688346 17230085 ~ 17241027 (-)
G185295 NA other upstream 710528 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 753762 17295501 ~ 17300782 (-)
nutm1 NA other upstream 771631 17313370 ~ 17328889 (-)

Expression


Co-expression Network