G184945


Basic Information

Item Value
gene id G184945
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16494730 ~ 16511182 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250611
taaaaaaaaaaaacaaaaaaaaaaaaaaaaaaacgacacaaacaaaaaacaagaacagaaccagaaccggGGAGTGTATCCGCCCTCCTCTCTTCAGCGAGGCGTTCTCAACAACAAGAacaaataaacttaaacaaaaatcacagttctagcaaataaaacaaagtcctaaaatctatttttgtacgtttttttttttttgcttcataaAAAATAGGTTTGTTCTGTATCTTACAATAAGTCCAGCActgaccaaaaacaaacaaaaggtaAACAGatgaacaataacaaaaaaactaaacaagtgAAGGGAAGTGAACGAGTACGTGTAGCTGGACGAGGGGACAATAACAGACAAGACAGGAGACAAAAGAGGACGAGTGAGAGGACAAAAGGTTGGTGAGTGTGgggacaaaagtaaaaaaatgaggGATTAAAAGTAGACTAGTGAGGGGATTAAACTGGACAAATAATGACATGCAGATGAGTAAAGGGGGAAAATGGAAGACTGAAGGTAAAAAAGTGGACAAGTAAGGGGACAAGTGAGGGAATAAGGACGAGTGAGGGGATGAGTGAGAGGACAAGTAAGGGGGTTGAGTGAGGGAAAGTAAATAAGTTGAGGGCATGAGTGAGGGAAAGGGGATGAGTGAGGGGACAGGAATGAATGAGTGGACGAGTGAGGGGATGAGTGAGGGAACAGGGATGAGTAAGGAGATGAGTGAGGGAAAGGGAATGAGTTGAGGGGATGAGTGAGGGAAAGGGGATGAGTTAAGTGGATAAGTGAGGGGACGAGTGAGGGAAAGGGGATGAGTTGAGGGGATGAGTGAGGGAAAGGGGATGAGTGAAGTAAAGGGGACGAGTTGAGGGGAAGACTAGAACTCTAatctttgctgtttttttttaggacgGGCATTTTGTACAGCCGCACTTGACCACCTTCTCCACCTCCTGGACGAAGGAGGAGCCGTCCGTGCACTGAAAGGTGTATTTCCTGCGCTTGGTGCGGAGGGCGGAGCAGcaggaagccccgccccccacAGGTGCCCTTACACTCTAGGCGGGAGACTTTCTCCGTGGTCTGGCAGGCCGCGTAACCCTGCTGCCTCTGATAGTGATCTCGGACCCGTTCTCCCCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250611 True 1137 lncRNA 0.46 3 16494730 16511182

Neighbor

gene id symbol gene type direction distance location
mab21l2 mab21l2 coding downstream 138721 16351574 ~ 16356009 (-)
rps3a rps3a,LOC107695588 coding downstream 309918 16180070 ~ 16184812 (-)
fam160a1 fam160a1 coding downstream 353460 16119674 ~ 16141270 (-)
dctpp1 dctpp1 coding downstream 398410 16095030 ~ 16096320 (-)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 coding downstream 726950 15763186 ~ 15767780 (-)
trnaw-cca_46 NA coding upstream 65641 16576823 ~ 16576895 (-)
trnar-ucg_6 NA coding upstream 65743 16576925 ~ 16576997 (-)
trnar-ccg_7 NA coding upstream 65846 16577028 ~ 16577100 (-)
trnar-ucu_5 NA coding upstream 65948 16577130 ~ 16577202 (-)
trnar-ucu_6 NA coding upstream 66050 16577232 ~ 16577303 (-)
G184939 NA non-coding downstream 26464 16462678 ~ 16468266 (-)
LOC111195238 NA non-coding downstream 32543 16453885 ~ 16462187 (-)
G184902 gatb non-coding downstream 396238 16097011 ~ 16098492 (-)
LOC111195239 NA non-coding downstream 401454 15992016 ~ 16093276 (-)
G184957 NA non-coding upstream 42817 16553999 ~ 16554312 (-)
G184958 NA non-coding upstream 43593 16554775 ~ 16554991 (-)
G184959 NA non-coding upstream 44072 16555254 ~ 16555678 (-)
G184962 NA non-coding upstream 51207 16562389 ~ 16563448 (-)
G184964 NA non-coding upstream 57366 16568548 ~ 16631423 (-)
smim14 smim14 other downstream 822776 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1113522 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1154150 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2403140 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 2404943 14089706 ~ 14089787 (-)
lrat lrat other upstream 386996 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 718903 17230085 ~ 17241027 (-)
G185295 NA other upstream 741085 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 784319 17295501 ~ 17300782 (-)
nutm1 NA other upstream 802188 17313370 ~ 17328889 (-)

Expression


Co-expression Network