G184993


Basic Information

Item Value
gene id G184993
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16647410 ~ 16703493 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250672
gatttcattttccagcaggacttggcacttggcaaaaCTATTCCACACCTTTAAGAAAATTTAGAGATGTGAATCTATAAAGTGGGTTCAATCAAATCGATCAtcatttaatcacagttctgaTCAATTTCAGACACTGATCTGTTTACAGACACTACAGAAAGCATGTAAttcctgtatttattataaaccaATATTACAAACAAACCTGATTTACCATTTTTCAGACTAAAATAAAGCTGTTGGTATATTTAAAATTCAGAATTTGTACTAAAGCACTAGTAATGACCATAGCTGAAAACAGCAGCCTCCTCTGAGCCAAATAATGATACTGCTCTGTTCTGCTgttaaattagaaaaataacctGCATGTCAAATATGGAAACTGCTAAAtgcaatgtaataaaataaaaacaaagtggtatttattgtctgtaacattttaagacatttagaGATGcattaaaagccttttttttaagactttgtAGTCTATTAACCCCTGTTATTTTCACTTCTCCTATGTTTCCTCAGTTCAGTTTGAATCAGGCGTATATTAAACCTGCCCTGAATACACTAACCCAGCTCCTCTAATCTGCAGAGTAGCTTTTAATGGAACACTgaagaaagtttggaaaagAAGCCGACTAAGTCAGATCTGGAGCAGGGGTTCTGTCAGGAGACCAGCCAGAAGGAGGGGACCCAGGAGAACCAGGATCCAGGGCGTCAGCGACGGAGCAGAGGATCCATCAGGAGAAGAATCAGAACT

Function

GO:

id name namespace
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250672 True 769 lncRNA 0.37 2 16647410 16703493

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_39 NA coding downstream 4679 16642659 ~ 16642731 (-)
trnaq-uug_3 NA coding downstream 4807 16642531 ~ 16642603 (-)
trnar-ucg_17 NA coding downstream 5165 16642173 ~ 16642245 (-)
trnar-acg_19 NA coding downstream 5268 16642068 ~ 16642142 (-)
trnar-ucg_16 NA coding downstream 5372 16641966 ~ 16642038 (-)
fabp2 fabp2,LOC108434304,LOC107714631,LOC107572697,LOC107700317,LOC107695844 coding upstream 47159 16750652 ~ 16756899 (-)
gucy1b3 gucy1b3,LOC107714654,LOC107757623 coding upstream 61934 16765427 ~ 16798748 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding upstream 101084 16804577 ~ 16827354 (-)
npy2r npy2r,LOC107700264 coding upstream 167524 16871017 ~ 16874481 (-)
fhdc1 fhdc1 coding upstream 339382 17042875 ~ 17059662 (-)
G184991 NA non-coding downstream 3134 16643997 ~ 16644276 (-)
G184990 NA non-coding downstream 3482 16643491 ~ 16643928 (-)
G184987 NA non-coding downstream 11475 16635490 ~ 16635935 (-)
G184964 NA non-coding downstream 15987 16568548 ~ 16631423 (-)
G184975 NA non-coding downstream 51160 16588066 ~ 16596250 (-)
G185027 NA non-coding upstream 128973 16832466 ~ 16832777 (-)
G185033 NA non-coding upstream 153898 16857391 ~ 16864206 (-)
G185041 fgg,LOC106602564 non-coding upstream 217543 16921036 ~ 16922494 (-)
G185073 NA non-coding upstream 262516 16966009 ~ 16969764 (-)
G185079 NA non-coding upstream 328638 17032131 ~ 17032392 (-)
smim14 smim14 other downstream 975456 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1266202 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1306830 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2555820 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 2557623 14089706 ~ 14089787 (-)
lrat lrat other upstream 194685 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 526592 17230085 ~ 17241027 (-)
G185295 NA other upstream 548774 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 592008 17295501 ~ 17300782 (-)
nutm1 NA other upstream 609877 17313370 ~ 17328889 (-)

Expression


Co-expression Network