G184998


Basic Information

Item Value
gene id G184998
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16674125 ~ 16675009 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250679
tggcgGTGGGCCTGCAGGTGCTGCAGAAAGTGAGTGAGATAAAAAGCAGAATAGAAgaaaagaggcggagctgaGAGAGATGTTTAATAGGAAAAGAGAAAGTTCAGGAGGTGCAGTCAGAAAAGACCAGGCCCCGGGGACCCCCTGTATATAACAGCCCTGTCTGCACAGCAGAACACTAAACAACAGTAGATAAAAGACTACAGactaaaaaacacaggacaCGAGAAAACAGACTTAAGTGACCTACccaagctccgcccacaaatTCCTTCTTCAATAGCAAGTGTTTATAGCAACAGACTAGCAGTAAGATTCTTTATAACttaaatatttcagtataatAGAAAACATTCTTAAACAATAAAGCAGCATCTCTGTTAAGAATCTGGATCAGAACatacattataataattatttagtattaatcacagaattaatTCCTAAATTTCAAGCTTTACAGAAGATTgaaaaaaactctctctctctctctctatctctctctctctatatatatatatatatatacagctctggagaaaattaagagaccacttcggtttctgaatcagtttctcagattttgctatttgtaggcaacaaaaaattcaatatttggtggaataaccctgttttttaatcacagttttcatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttatgcctttactcctggtgcaaaaattcaagcagttcattcaAACATTTAAGTGAATgtcttttaaactctttttttcctAGGTAATTTTTTGTCTATTATGGATAAATGTTCTGAAATTAACTGattgaaaaaagt

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU250679 True 843 lncRNA 0.35 2 16674125 16675009

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_39 NA coding downstream 31394 16642659 ~ 16642731 (-)
trnaq-uug_3 NA coding downstream 31522 16642531 ~ 16642603 (-)
trnar-ucg_17 NA coding downstream 31880 16642173 ~ 16642245 (-)
trnar-acg_19 NA coding downstream 31983 16642068 ~ 16642142 (-)
trnar-ucg_16 NA coding downstream 32087 16641966 ~ 16642038 (-)
fabp2 fabp2,LOC108434304,LOC107714631,LOC107572697,LOC107700317,LOC107695844 coding upstream 75643 16750652 ~ 16756899 (-)
gucy1b3 gucy1b3,LOC107714654,LOC107757623 coding upstream 90418 16765427 ~ 16798748 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding upstream 129568 16804577 ~ 16827354 (-)
npy2r npy2r,LOC107700264 coding upstream 196008 16871017 ~ 16874481 (-)
fhdc1 fhdc1 coding upstream 367866 17042875 ~ 17059662 (-)
G184996 NA non-coding downstream 16533 16655797 ~ 16657592 (-)
G184991 NA non-coding downstream 29849 16643997 ~ 16644276 (-)
G184990 NA non-coding downstream 30197 16643491 ~ 16643928 (-)
G184987 NA non-coding downstream 38190 16635490 ~ 16635935 (-)
G184964 NA non-coding downstream 42702 16568548 ~ 16631423 (-)
G185000 NA non-coding upstream 2966 16677975 ~ 16681857 (-)
G185012 myoz2,LOC107695402,LOC103360806,LOC102203409,LOC100711322 non-coding upstream 24715 16699724 ~ 16701308 (-)
G185027 NA non-coding upstream 157457 16832466 ~ 16832777 (-)
G185033 NA non-coding upstream 182382 16857391 ~ 16864206 (-)
G185041 fgg,LOC106602564 non-coding upstream 246027 16921036 ~ 16922494 (-)
smim14 smim14 other downstream 1002171 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1292917 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1333545 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2582535 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 2584338 14089706 ~ 14089787 (-)
lrat lrat other upstream 223169 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 555076 17230085 ~ 17241027 (-)
G185295 NA other upstream 577258 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 620492 17295501 ~ 17300782 (-)
nutm1 NA other upstream 638361 17313370 ~ 17328889 (-)

Expression


Co-expression Network