G185041 (fgg,LOC106602564)


Basic Information

Item Value
gene id G185041
gene name fgg,LOC106602564
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16921036 ~ 16922494 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250736
atatattttatagactTATAATCTTCCCCattgacccaaaacacacacactcacgtttCATTAAAAAAGGTGGAAGGATTTATTTGAATACAATTAGATGAACATGAATGATCTGAACAATTATAAAAGTGAATGATGTGAAAACAGGAAATAGCGTAGCGATGTGGTGACGTCAGACCGTAAAGAATCAGGCTATTAGAGGAACGTGGGTTCTGGAATATCTTAGACTAAACTCCTCAGATTAGACAGAAACATAAATGCAGACAGACAAACTGCTGtagatatttttttcattaattcgCTAACAGTTTCTGTTAAAACCCTCAGAGGAGAAGTGTGAGACTGTGTGTTTAAGGGCTTGGTAGGTCTCCCTTTCCGAAATCGAGGCCGCCCTGCTGGCCCCCAGCGCTGATCCTGTTGATGGGAATGATCTTCATGGTGGTCTGCTTCAGGGAGTACCAGCGGCTGTGCCATGTGGCCCAGATGATGCCGTTGTCGAATCCGTACTGACCAGCATCCTTTGCAGTGTATTGGCCCCCTGGTAGTATTTGCCGTTGAGATGAGCAGCGTGGCAGCGGTTCATCCACCAGCCTGAGCCGTCCTGTTTAGCACAGTTTCCGTTGAACTTGTCGTTGTCCTGGTCGGGCGTACTGAACTGCATGCCGTTATGGGAGGTGTAGAATTTGTCGCTGGGGTCGTCACCGAAGTCAAACCCATCAAAAGCATCGCCGGCGTCTCCTCCGTGATAGTAGGCGTAGGTCAGGCGGTACTTATCCGCCTCAGGGGCTACTTTAAACATGGCGTAGTCGGCATACCTGCAGAAATGAGGAATAATTACATGATATACTTCTGGTGCTTTTGATCAATTCGTGAcatttaagaggaagaaagcTTATATCTAAAtagattttacagatttttctgCTTTGCAATTAATgggactttttattatttaaacattatttaaatttcaatactgcattgtttaaataagtttttatataat

Function

symbol description
fgg Predicted to enable signaling receptor binding activity. Acts upstream of or within blood coagulation, fibrin clot formation. Predicted to be located in extracellular region. Predicted to be part of fibrinogen complex. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in congenital afibrinogenemia and multiple myeloma. Orthologous to human FGG (fibrinogen gamma chain).

NR:

description
PREDICTED: fibrinogen gamma chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250736 True 1006 lncRNA 0.43 2 16921036 16922494

Neighbor

gene id symbol gene type direction distance location
npy2r npy2r,LOC107700264 coding downstream 46555 16871017 ~ 16874481 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding downstream 93682 16804577 ~ 16827354 (-)
gucy1b3 gucy1b3,LOC107714654,LOC107757623 coding downstream 122288 16765427 ~ 16798748 (-)
fabp2 fabp2,LOC108434304,LOC107714631,LOC107572697,LOC107700317,LOC107695844 coding downstream 164137 16750652 ~ 16756899 (-)
trnar-ccu_39 NA coding downstream 278305 16642659 ~ 16642731 (-)
fhdc1 fhdc1 coding upstream 120381 17042875 ~ 17059662 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding upstream 166660 17089154 ~ 17113139 (-)
sfrp2 sfrp2 coding upstream 195558 17118052 ~ 17124751 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 507468 17429962 ~ 17501430 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 683611 17606105 ~ 17652838 (-)
G185033 NA non-coding downstream 56830 16857391 ~ 16864206 (-)
G185027 NA non-coding downstream 88259 16832466 ~ 16832777 (-)
G185012 myoz2,LOC107695402,LOC103360806,LOC102203409,LOC100711322 non-coding downstream 219728 16699724 ~ 16701308 (-)
G185000 NA non-coding downstream 239179 16677975 ~ 16681857 (-)
G184998 NA non-coding downstream 246027 16674125 ~ 16675009 (-)
G185073 NA non-coding upstream 43515 16966009 ~ 16969764 (-)
G185079 NA non-coding upstream 109637 17032131 ~ 17032392 (-)
G185280 NA non-coding upstream 282247 17204741 ~ 17216109 (-)
G185328 NA non-coding upstream 434934 17357428 ~ 17360299 (-)
LOC111195245 NA non-coding upstream 448258 17370752 ~ 17429772 (-)
lrat lrat other downstream 19352 16898178 ~ 16901684 (-)
smim14 smim14 other downstream 1249082 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1539828 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1580456 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2829446 14091509 ~ 14091590 (-)
LOC103032582 NA other upstream 307591 17230085 ~ 17241027 (-)
G185295 NA other upstream 329773 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 373007 17295501 ~ 17300782 (-)
nutm1 NA other upstream 390876 17313370 ~ 17328889 (-)
G185321 NA other upstream 407524 17330018 ~ 17331954 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location