G185073


Basic Information

Item Value
gene id G185073
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16966009 ~ 16969764 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250777
GTGTCCAAATGACTTTTATTAATGTGTACACAatcctgaccaaaaaaaagaaagaaaaaaatgaccatAAGAGCAAAGCATAAATTTGCTAGATGAGGGCTCTGGACTTTACAAAACACCAGTAAAGTGGTGAAAAACTCCCTAAATTTGGAATGTACCATGTTAAGACAGGgcagcacacaaacaaacaaacaaacaaacaaacaaacaaacagctagTAAAGGACATCTTTAGTGAAAATTAGTTAAACTTGTATGTTTTATTGAAGAACCAAAGAATGCTCTGTTTCCTAACTTTATTCTGATAAGCTCCACCTCCTGCACTGCAATAAAACCAGAATTCAGTCAAGGTAATACCCAAACACAGAGTTAGCATGATCTACAGATCTGCCTACTATTTTGGACACATCTAGCCAGATCTAGTTTTTAATGATTATTCCGTTAATTTGATAAATAAGAGAATCTGATCACTGCAGAACATCAGTAATATCAGTTCATCAGTAATCTGACGTATTTACATGAATCtgggtaatcagataatggTAAAACTCAAAGACAGTAAATCTCAATTCTGAAATCTCATAGTGTAAGACGTGATGTAATcatcacaaaacacaaacttcACACCGCAgcttatttttaacatattgagCTGCAATACGTAAATACATCACATAGAAGATGAAgatcattaatatattttagtttcagCGTCGCTTCAAGTGCTGTATTAATACTAACAGGGTCTGTTTTCACTCATGCGCAGcctgagacatcccagaatacaaAACCAGGACTCTGATATTGCATAAGCATGGTGTAGGAGGTGGGGCTTGCTAGAATATGTGCAGGAAAATTAACAGGATCAGGATATCTCTCTCTAAACTATCACTTAGAAACATGTTCTGTAGTTAACACTTACTTCTAATTGTTAACTCAACACTACGGGCACTTCTGTTCCATTTGGCATCATGGTTCTGCAACAAGGTTCTGTAACAAGGTTCTGCATTGTTCATAAGTTAAAGCATGCTGTGTTGGAGGCCACAACCATAGTAGCCATTCTTCTTTAGCTATTCATGGTGTATTATATGAAAGTGTCCTAGAGAGAGCTCTGCTGATACACATTAAGctagagatatacttgctgtttggCTGTACATATGTGTAGATAACCGGCTGCGCTGTGAACTGTGTGCACCTATGTGCTACTAGAATTACTCGAGGCTTCCACTACAGGCTGCCACAATGCCAAGAACAACTTTTACAGTGGAGAATACTAATTTTAGAATGTGTTTTGGGATTGTCAGATACTAGAGGGCACTCCCAAGTGAGTCCACaatgaatgggttcatatggagcaattaaggaaaatcataatttataaatgtttgatcatttttatactaAAACAAATACTAACTGTCTCAACACACAACAATATCAAATGTTCCAGTGCtgcaaacataatttttaagctATTAAATTCCagttttaaaccttttaaacggGACGaatcttttgtatttttgtgcaCAACAGACACACCAAACAGACGCAGGATACAGAAGGCAGACATCCTGCATACACAAATGCTTAGCTAGCAGCAAGTATATCTCCAACCACAGGCAAGAAAAACTGGTGATGAATTTGTGTTAAACTTGTGTAACACAATAACAGACCCCGGCACTGAAAGACAAAcacataatcaataataatgagGGGTTAAAAAGGTgctataaattaaatacaaattgaatttttttaacaaaatctgGCCTTAAGGCTCaaggagcttattttttttttttttttttaaataataataagtgctTCCCTTTCTTGTTGCATATTACAGAGTAAACATGAATAACGGACTGTACTTGCTTAATAATCACACACGGCCTTTTGTGGGCATcagacacacataaacagacacacagaatGCTTATTGTGTTCATAATCAGCCTAATAATCAACTGTGAACTGTGTTTTACTTAAGTGTGCACATGTGCGCATGTTTACATCCCTTAAATTCCAGTGCatccttgtttttttgtttttgttttttaaagatgaCCCCGTAAACACACTGTTATGTCCTCCTAAAATAGTAGAACATATTGTTTTGGACAGAGAACACGGCAGGACTTTATCTATGGGTTGACCTGTGTGTTTAATTTCAGACTATGCTGTCAcatctttataaataaaagattTGAAATGGGTAAAACGAGGCTGATCACTGTATTCAACTGTTTGAATCCTGACTTCATTTCTCAGAAGCACAGTAAACAGTGTTAACATGATCTGAACTATTGACTGTATATAAACATGGACAAAACAAAAACTAGTACTGGTTCCTAGTACTAGCCTGCTTtttggttgcagtatgatgtgtagccCCACCCAGCCTCATATGTTTCAATGATAAAAACAGCCACGCCCATTTTCCAACTCACTTTTATCCTCTTTATTAACTTTGGTTGCATTaacattttttgcagttttctaTTTTGGCAAGTCTGATATTAGTGTAAAACGACCAATTTTATGCAATTAGCTTTTTTTCAATAGCCAGCTGACGTTAACAGTTAGACGTGCTGGACTTTTCGTCACACTAGACCGCAGTAGCCTTAGTTTGTCTCAGCAGTAAACAGAGATAAGACCTGGTACTGTATTTGAtataatttaatgaaaatggAAATGTAGTTTGGTCATAGAATACATGAACTGCACTTTTACAGTTGTAGCCATACAAAACGCTCCACTAGTGGTTTTCAAGGCTGTGCTAcaaactcaatgaaggcggcCTGAGACACTTCGTCTGGGAAAAGAGGGTGGGGCTACCAAATGAGTAGGCGAATCTGACTGCACTTTTGGTTTCACTGCACAGGCTCTGATTTTTGGAAGTAAATGGAATCACAGTGTCcgtacttatatacagtcattgatGTAAACTGTAATCATATCAGTCTTTCACAACACTACTGGCTTCACTGCCTGTGTCCTCAGTGCTGTAATattcaaactctttttttttttttttttttttttttttacctttcttcaaatctccaaaacagcattCTTCATTCAGCACTCCACCAGAATCAGCTTCAGAAAGAACTCCAGCATCCGACTCCCTCCCTCCCCACCAGTGTGTAATCCTAttttctttcaaataaaaagaaCAGGTAAGAATGAAGTAAGTGCCTTTGAAAGCTCAGAGAGCAGGAAGTAGGTCAGTATAGACGCCACAGAGGACGATGTGACGCAAGGGTGGTGTATGGCACAGAGAGTGTGGTGAGGCCGAGCTGGGAGATGAGCACAAACGTCTGTGTTTTGAGCAGTGAGGGATGAGGGACGGGGGAGTATTATTGAAGGTATCGGtaaactttaaaacagtggTTCCCCGAGTCAGCCACCACCACATGGCCGTCGGAGGTCAGGGCCAGTCCCTGTGGGCCGTAGAGCGGGTCAGCGGAGGTGTTGATGTAGGAAAGAAAAGATCCGCTGCCAT

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250777 True 3520 lncRNA 0.38 2 16966009 16969764

Neighbor

gene id symbol gene type direction distance location
npy2r npy2r,LOC107700264 coding downstream 91528 16871017 ~ 16874481 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding downstream 138655 16804577 ~ 16827354 (-)
gucy1b3 gucy1b3,LOC107714654,LOC107757623 coding downstream 167261 16765427 ~ 16798748 (-)
fabp2 fabp2,LOC108434304,LOC107714631,LOC107572697,LOC107700317,LOC107695844 coding downstream 209110 16750652 ~ 16756899 (-)
trnar-ccu_39 NA coding downstream 323278 16642659 ~ 16642731 (-)
fhdc1 fhdc1 coding upstream 73111 17042875 ~ 17059662 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding upstream 119390 17089154 ~ 17113139 (-)
sfrp2 sfrp2 coding upstream 148288 17118052 ~ 17124751 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 460198 17429962 ~ 17501430 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 636341 17606105 ~ 17652838 (-)
G185041 fgg,LOC106602564 non-coding downstream 43515 16921036 ~ 16922494 (-)
G185033 NA non-coding downstream 101803 16857391 ~ 16864206 (-)
G185027 NA non-coding downstream 133232 16832466 ~ 16832777 (-)
G185012 myoz2,LOC107695402,LOC103360806,LOC102203409,LOC100711322 non-coding downstream 264701 16699724 ~ 16701308 (-)
G185000 NA non-coding downstream 284152 16677975 ~ 16681857 (-)
G185079 NA non-coding upstream 62367 17032131 ~ 17032392 (-)
G185280 NA non-coding upstream 234977 17204741 ~ 17216109 (-)
G185328 NA non-coding upstream 387664 17357428 ~ 17360299 (-)
LOC111195245 NA non-coding upstream 400988 17370752 ~ 17429772 (-)
G185317 supt16h,LOC106577942 non-coding upstream 422107 17391871 ~ 17393833 (-)
lrat lrat other downstream 64325 16898178 ~ 16901684 (-)
smim14 smim14 other downstream 1294055 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1584801 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1625429 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2874419 14091509 ~ 14091590 (-)
LOC103032582 NA other upstream 260321 17230085 ~ 17241027 (-)
G185295 NA other upstream 282503 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 325737 17295501 ~ 17300782 (-)
nutm1 NA other upstream 343606 17313370 ~ 17328889 (-)
G185321 NA other upstream 360254 17330018 ~ 17331954 (-)

Expression


Co-expression Network