G185280


Basic Information

Item Value
gene id G185280
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17204741 ~ 17216109 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251055
TGATTTAGTGCTCACCTGTTTCCCATGTGTTTATTGTTAGTAGTATTTAACAGTAAGCAGTAAGAATGGATCACCTGAACTCTGGGGGGCACTTTAGGCAGTGgttgaccccccccccccccccgcccccgcCCACCACATTCAGTCCACTTGTAGTACAGGgggcGTGTTTTTCACCCCAGACTTCAATCAATCAAGCAATCAAGCCCAGAGAGAGGAGCTGATATGAGTAGAAGAGTTCTGTTTATGTTTTACTCAGGTTGAATCTGATCTGCAGTCAGAACAGCACTTGGAAGATTTTGGAACCTCTTGTTAAATTCATATAGTTTCCCAGGCATATTTCATGGAGAATC
>TU251056
TGATTTAGTGCTCACCTGTTTCCCATGTGTTTATTGTTAGTAGTATTTAACAGTAAGCAGTAAGAATGGATCACCTGAACTCTGGGGGGCACTTTAGGCAGTGgttgaccccccccccccccccgcccccgcCCACCACATTCAGTCCACTTGTAGTACAGGGACACGCAGCCCGGTTGGACCCAGCTGGGCCTCGTTGGACTGATCGAGCAGGCAGCTGGGACCTGCTTAAAAGCCCTGCTTTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251055 True 353 lncRNA 0.46 4 17204741 17216109
TU251056 False 247 lncRNA 0.55 3 17209482 17216109

Neighbor

gene id symbol gene type direction distance location
sfrp2 sfrp2 coding downstream 79990 17118052 ~ 17124751 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding downstream 91602 17089154 ~ 17113139 (-)
fhdc1 fhdc1 coding downstream 145079 17042875 ~ 17059662 (-)
npy2r npy2r,LOC107700264 coding downstream 330260 16871017 ~ 16874481 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding downstream 377387 16804577 ~ 16827354 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 213853 17429962 ~ 17501430 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 389996 17606105 ~ 17652838 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding upstream 447242 17663351 ~ 17675440 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding upstream 492742 17708851 ~ 17737741 (-)
LOC103045226 NA coding upstream 552271 17768380 ~ 17772217 (-)
G185079 NA non-coding downstream 172349 17032131 ~ 17032392 (-)
G185073 NA non-coding downstream 234977 16966009 ~ 16969764 (-)
G185041 fgg,LOC106602564 non-coding downstream 282247 16921036 ~ 16922494 (-)
G185033 NA non-coding downstream 340535 16857391 ~ 16864206 (-)
G185027 NA non-coding downstream 371964 16832466 ~ 16832777 (-)
G185328 NA non-coding upstream 141319 17357428 ~ 17360299 (-)
LOC111195245 NA non-coding upstream 154643 17370752 ~ 17429772 (-)
G185317 supt16h,LOC106577942 non-coding upstream 175762 17391871 ~ 17393833 (-)
G185318 supt16h non-coding upstream 179144 17395253 ~ 17397947 (-)
G185336 NA non-coding upstream 194101 17410210 ~ 17760211 (-)
lrat lrat other downstream 303057 16898178 ~ 16901684 (-)
smim14 smim14 other downstream 1532787 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1823533 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1864161 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 3113151 14091509 ~ 14091590 (-)
LOC103032582 NA other upstream 13976 17230085 ~ 17241027 (-)
G185295 NA other upstream 36158 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 79392 17295501 ~ 17300782 (-)
nutm1 NA other upstream 97261 17313370 ~ 17328889 (-)
G185321 NA other upstream 113909 17330018 ~ 17331954 (-)

Expression


Co-expression Network