nutm1


Basic Information

Item Value
gene id nutm1
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17313370 ~ 17328889 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251071
TCCCTTGAACAGCATTCTTTGGTACGAAATCCTTTGGTTCACAagcagatatttaaaaaagaacatacAAAAAGACAGTCCTTCAGTAAACataaaactaatacaaaatTTGTACAAGTACAAATATCAAGGCACTTTAAACCAACATCCATCTCAACAAACTCACAGACTACAGATAGTGTACAAATAATGGCTTTGGTTCATCATGgagaaacaataaaacaaaaagacaaaaagtcaAAAAGATAACCAGCAGGAGTCCAATCACACAGACCAGTAAACGTTTCCTCTGATACAgtgaacatttaaacacacacacacacacacacacacacacaaaccattcacacctaaaaaaataatagcaaaTACAGTCTTGGATAAAACAGGTGGGTGCATAGAGACTGATTTCAGATCAGATCTACATTTAGTGTTTGAACTTTTccgcatcttttttttcttcatcttcctTTTTATTGCAATACAGTTCTTCCCCAATGACACtttcttaaattaaataaccCCACGGTCCTCATTCACTCTTCTTACTGACGACTCCATTTCCGTTATGGAAGCCGTTGTTGTTGTGACCGGCTTTTCCGTTGGGAATGCCGTTGTGATTTCCGTCGGCTTTGACCTTCTCCGCTCCTTCAGACTGGAAGTGATCCTGGAGGAGCTTCCGGTAGGTTGGATGTGTCGTCAGCAGGTCGTATAACGCAGCTTCTGTGGGCTGTCGTCTACTGCTCAGCTCCGTGTACATCTCTCCAATACTGTACTGCGGAACTCCCACCAGCGCCGCCATCAGGCCTGACAGATCCTCCGCGCTCAGGAGGTCATCACCATCCCGGTCATACAGCGTGAATGCAGTATGAATTAGAACCTCTGGACTACTGAAACaagcagcagcacacacactcaaacacagctGCCTCAGGTCCAGTGTGTCAttctttGAATATAAGGAACAGATCTTTGCAGCGGTCTTTTTGGCGGTCAGTCCCAGCAGGCTGGTCAGCTGTTCTACATTTACCACAGTGTCCTGTTTTGAGTGACAGTAATCAACCATAGAGTTCACCACTGTCTCCACCTGATCAGTACTGAAACCGTGACGCCGCAGGAGTTTCAGGGTCTCTTTAGCTGGAGACTCCAGAGGAAGTGAGAGACCACCCAGTTTAGTGGCAGGAAAAAGACCCTCCATTACGTAATTTGTAGCTGGAACATTTAACGCTTTGGCCATAAGTTTCTGGACGTTATCTGCGTACAGCTCAgggttctctctctcctcctgagACGGCGTG
>XM_022682039.1
tagtaaatTAAATGTGGTTTATATTGGCTGAATagaatgctgtttatttttaaatataaaaacaagctGCACTGATAACTGATGAAGTGAGCGAACCGATCTTCAGTGATAGCTGGAGGCTCTGTTGACTTGCACTGCAGTGAAAgTTTTCTCATGCAGATGTACCTTCACCTGTAGACCTCACTTGTGGATCAAGCCACCAGTTCCCCTCCTTCTCAAGAGCAAGGAGGAGAAAGGACAGAGAAAGCCATGACAACCCCAATCACTGAGGGCACTGGAAAAAACGCAGAAGATTGTGGAGTTGTTCAAGACCTGGCATCCCTTTTCCTGTCCACTGAGCCAGAAGATGGTGAAGGGACCCCAGGATGTTCTACACCATTTGAAACATCTGTTCTTTCAACTGAAGCTGAACTGGGACTTGAATCTGCAAGTTCACCTTGTCTTTTTTTAGAAGACTTCCTTGTAGATGAGGACATCTTTATGAGTCCAGAATGTGTCGCCCTTCCTGAAGATCATCCAAGACCTTTCATGGAACCACCAGTAAATCCTGCAGTATATGTACCTGATCCTGAGCCCATTTTGAGTTCAAAACTTACTAAGAACCAAACTGAGCTTGATCCAACTCAAATGGAAGAGCAAGAAACTAAGCTTGCAATCTTGGAACTGCTTCGTCTGATGGCAGAAGATCCTGTTCAGTCTCAGCTGGAGTCTGAACCACTTGATTGGTTGCAGAAAAACCATCAAGAGCCTGGTAGTGAAGAACTTCATTCCTCCCATAACTCTCCGCCTTCCTCTATCGAAGCCATGGACTATGGTGCTGTTCCAGACCTGGCATCCCTTTTGTTGTCCACTGACGAGCTCATAACAATGAACACACTGCAGCCAGATGATGGCAAAGGGACCTTAGGAGATCCTACACCATTTGAAACATCTGTGCTTTCAACTGAAGCTAAACTGGAACTTGGATCTGCAAGTGCACCTTGTAATTTTTTAGATTACATCTTTATGAGCCCAGAATGTGTCGCCCTTCCCGAAGATCATCCAAAACCTTTCATGGAGCCACCAGTAAATCCTGCAGTGTATGTACCTGATCCTGAGCCCATTTTTGGTTCAAAACATACTAAGAACCAAACTGAGCTTGTTCCAACTCAAATGGAAGAGCAAGAAACTAAGCTTGCAATCTTGGAACTGCTTTGTCAGAAAAACAATCAAGGGCATGGTAGTGAAAAACTTCATTCTTCCCATAATTTTCCACCTTCCTCTTTCGAAGCCATGGAGAATGCATTCATATGGCCTCCTCCAGAGGCAAGATTCATATCTCAGTCTCCTCCAGAACCACAACCTTTTCAAGACGTCCCTGGACCATCACTGCCTCTAAACCTGCCTTCCACCTCCAACTATGTCTCAACTGAACCATGTGGTAATGCCTATCAATTACCCAGACTCCAGCATGTCCATCCTTCTTATCTTCCAGTAGTCCCATGTCTCACGGTTAACgggatgcaatcaaatcatcaaTTACCACCTGACTTCTTCCAGCCAAGCCTTCAGTTGCCCAATGGAATCTGGCTCATCCCACATAGTTCATATATGAAGATCAACCAGTCAAACTTCACAGTTGGCCCTCAAGTGCCTCAGATGTATAGCACTACATCATCAGTATCAGCTGCTCCTTCATTCAGTGAGGTCCCGCTCCTTCCTTGCCAAGACTTCCAATGTAACACCAGCCATGAACATGAACAGCCCCTTGTGGTACAATCGTGTTGCGAGGGGTATAATCCTTCAAAGGAACTGTATAAAAACTACAGGCGCTGGCAGATGTTCTGCAAGGTAGCATCTTTTGTCTACACCAGCAGTCCAGATGTGGAGGCCTTGGCTTGCTTCTTCATacaaGTAATAAACTCCATCACTCTTCAATGCCCCGGTGTCCCTCGTTTTGAAGCAGTGAAGATCGCTGTGTCACAGTGGGAGAAGCTGTCCGACTTTGAACGAATGGAGTACTACCACGAGGCTCAGAGGTTCATGGACTATGAACTGAAGGAAATGGTAAGCTTATGGACAATAGAAGCAGCAAGCAGTCAAGACACTGAGCAACAACAGCAAACTCCAACTGTGAGAGACGAACCACCAGCCATGGGCCAAGCTGCTGATCAGAAGAAAGGCTCTAACTCAGCACCACCTGACGTAGTTAAAGCGGCACCAGACGAGTACAGCGAGGTCATGGAAGCTCCAGAGACAAATGACAAAGAAGAGTCTGATGACAATCAAGACAAGAAATTCATGCAGTATGATGACAAGGAGCAAGATGGGTTTTGCAGTCACGTTGTCAGTGAGGACGACTCAGAAGTAGCACCAGAAGTATGCCACTTACATCCTCAATCCCCAGATGAATCCATTTATGCTACAGCACCAGAACCAAAACAACACCCTGAACCACAGCCTCAAACTCTCCAATCTGGCTACTACATAGACAATAGTATACTTCCACCACCTACGACCTTCAGTGAAAAACCTGCTTTGCTAAATCAATCGAGTGATCCTGGAATGCCCTTACCTGACAAAGATGTCCCGGTTCCTGCCTCAAGCACTGGGTTACAGCTTTTaccttttcaaaatgtgaaCACCCAGGTTAAATTTGAAATGTTTCCTCCACTGCCTGAACCTTTATCTTACTTCCAGATGAGTTCTATCAATCACAGTAGCATGGGACATCCTGATTGTGTCCCAGAAAACTGCTCTTTACCAACATTAGCTCAAAAGCACATCCATAGTGCAGTTGAATCTTGCCTGTCTGACCAGAATGCGCCTTCTTCTTCACATACAAGTGCACCTATTATTGGTTCAGTAAGTGAAGACATCAAGCAAGCTTCCAGTCCCAAAACCTTGTGGAAGCAGTTCCAAAGCACTGGAATTGACTTCAATAGTTTCCAGAATGATCTGGAGTCTCCTGAGAACACTGAAAATATAACCTCTGGGGCCTCTGTAGAAATGTCTTCTAAGGATGTGATCAAAGAGGACAATGCCGACAAAGGTATGACAGGACAGCAGTCACAGAATAAGAGCATGGCCGATTTAAAAAACGACAGGGATGGGACTGACATGGAAACATTTCATGTGACAGATAACAATGATGACCTTCCCAAGATGTTCATGAACCCAGTAGAGCAGGCATGTCCAGCTGCACAGCTGCCGATTAAAGACAATCTTAATCATCCAGAAGTGACTCGGCTCCTGACAACATCCTCTTCCTCAAGCCCGAACTACCTCACTTCATCTACACTTTCAACAATCCCTAGATCAGAaagcaaaccaaaccaagaaCCAAAAGAAATCAACAACAAGGCTGTTCATAGCTTTGTTATGGACACCAGAAAGACAAGGAGATCAGGTTCTTTGCAATCTGAAGAGACAGCAGGAAAACATGTTGATGTGAAAATGAAGAGAAAGGCACCAACACAAGCTGTAAACCCAATGTTAGCAAATGAGGGACACAGAAAACATCACCTGGTAAAAGCAAAGGAGATGACAACCGGTAAAGCAGCAAGAAGGGGCAAGCTTAATTGGGTGACACTTGTAGATGAAAGAAGATGGACAAGAAGCTTTGACAAAAAGGACAAGGATGTTCAGGCTCATAACAAGAAGGGAAACACAAATTATTTGGTTTATAATAGAAAGACCAGTCTTGTAGATATGCCAAGGGTCATCAAGCATGGGGCTGATGAGGAAAAAGTGCCTGAAATTCAAGTTATAGACCAATCAGAGAGAATAGACCAATTTGAGCGAAGTGTAGTGCAAGATCAAGTAAGCAATGGAAGTACAGATCAGAGGAGGATAACTAGAAAATGTTGCACGGCATCCCAACAGCTTCTGTTGGGAAATGGAGGAAAAGGAAAGCAgaatttggacaaaagcattggaaaaaacaagacaagctTGACTGAAGTACAAGAGAAAGCTGCCAAAAGGTCTCAAACCAGACAGCATAGTCAACACATGGTCATGACGAGGAAAGGGACAAGGACGAAACAAGAGGAAACAGCAAGAAAACGACCAGCAACGTCCACCACAGGCCTGCAGTGGCAGGAGCAGAGGGATCTTGGACAAGATCAGCAGAGTAGATGTGAGTACCAAGGGTTACAGTGCCAAGGTCTGAACAGATCGTCAACAAGGAGCAAGAAGCCATTAAAATCATCGCTTTTAGCTCTAGTTCTCACTCAAACTAGAcgaaaagaggaggagagaacaAACGATAAGCGAGAAGAAATAGAAGGATCCTTGACAAGGGCAAAGAGGGCAAACAGTGACAAAAGCTTGGAGAGTCTTCCAACAAAGAAGCAAAAAATGACCAGTAACAAGAAGCCAGGATTTCAATTTGACGTTGCAAATTTGAAAGCTAGCAGCACACCATCAAGCTCAGAAAGGCCGAGATGGAAAACAAGGGGATCTCCAGCCACCCCAAGAGAAATgagagcagaagagagagagcagaggaggTTACTCGAGTTTGTTCTTcacaaaaacactataaaacacatGGTAAAAAGCTGTGGAGCCAAAGAGTAAAAACTCAAACCAGTCAGAAGGGACTACGACAAAGGTGGAGCGACAGACTAGCAACActgcaaaagagaaagagggcaaAGTTGACAACGCAGAAACCATCctgatttcatttttatttacaaacttCATATATTAAAATGTCCCTTGAACAGCA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
TU251071 False 1298 lncRNA 0.44 6 17313370 17321451
XM_022682039.1 True 4717 mRNA 0.44 7 17321438 17328889

Neighbor

gene id symbol gene type direction distance location
sfrp2 sfrp2 coding downstream 188619 17118052 ~ 17124751 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding downstream 200231 17089154 ~ 17113139 (-)
fhdc1 fhdc1 coding downstream 253708 17042875 ~ 17059662 (-)
npy2r npy2r,LOC107700264 coding downstream 438889 16871017 ~ 16874481 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding downstream 486016 16804577 ~ 16827354 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 101073 17429962 ~ 17501430 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 277216 17606105 ~ 17652838 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding upstream 334462 17663351 ~ 17675440 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding upstream 379962 17708851 ~ 17737741 (-)
LOC103045226 NA coding upstream 439491 17768380 ~ 17772217 (-)
G185280 NA non-coding downstream 97261 17204741 ~ 17216109 (-)
G185079 NA non-coding downstream 280978 17032131 ~ 17032392 (-)
G185073 NA non-coding downstream 343606 16966009 ~ 16969764 (-)
G185041 fgg,LOC106602564 non-coding downstream 390876 16921036 ~ 16922494 (-)
G185033 NA non-coding downstream 449164 16857391 ~ 16864206 (-)
G185328 NA non-coding upstream 28539 17357428 ~ 17360299 (-)
LOC111195245 NA non-coding upstream 41863 17370752 ~ 17429772 (-)
G185317 supt16h,LOC106577942 non-coding upstream 62982 17391871 ~ 17393833 (-)
G185318 supt16h non-coding upstream 66364 17395253 ~ 17397947 (-)
G185336 NA non-coding upstream 81321 17410210 ~ 17760211 (-)
G185311 emc4 other downstream 12588 17295501 ~ 17300782 (-)
G185295 NA other downstream 58737 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 72343 17230085 ~ 17241027 (-)
lrat lrat other downstream 411686 16898178 ~ 16901684 (-)
smim14 smim14 other downstream 1641416 15666111 ~ 15671954 (-)
G185321 NA other upstream 1129 17330018 ~ 17331954 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 689833 18018722 ~ 18050369 (-)
apela NA other upstream 694233 18023122 ~ 18097691 (-)
G185890 LOC108443824 other upstream 2619193 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2788537 20117426 ~ 20127092 (-)

Expression


Co-expression Network