G185295


Basic Information

Item Value
gene id G185295
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17252267 ~ 17254633 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251079
ctgtatatagttttcttttattttaatattgtctTTGTTATTAAAACAGTGGTTTCTTGAATTTTGTCAGTGTTATTTAATGTAATGGACAGTTATCAAAGCGTTTTTACAATATGGTATTGCTGATTATTGTACCATTTCAATATATcagtaaaataagaaattaaaacatataatataaacaatattaattgTGTAATGATGAGACTTCAGAACTGCTGCTACTCTCCTGCTACAAGAACTCCTTCTGACTGGATGTTCTGGATAATCAGATAACTGATTTGTGAGTTTTAATAAAGAGattttgaacaaaaatataaacattattttgcattttgttgGAAGAACACGATGCAGAGGAAATATCATCTACACTGCACACAGTGCAATAATCACATTCATCCTCTAATCAtggaaaaatatgaataaacacCTCAGacagaaatataaacaaaactataGTGCTAAATCCACCAGCCTGGAATGTAAAAAAGTATGCTTTATTATTGTTctattgtgtgtatttaaattCCAGTGTCAGATACTGTTTCCAGATTGCTAATTGCAGtggttgttttattgtttttaaaatttgataaataaaaaagatctaatatttaataatattatttattagaaaTAAACGTTATTTTGGTATAAGGCTGAACCATTTTACACATATCACAGACAAGCCATCAATGTGCACTGTGtagtttgatttagggcgtgtcatttagtctttgctatcgtaacgactggacaagtacaccttgcgcgcctcgaaaaaggcatgtactaattctcgtAATTAagcatgggtgtggttaattttgggcacaacgtgaaataaaccaatcgaCGTGTCAaatgctcatcattctctttaagagccaggtgagctctgactttggcatattGCAATTTTAATAGCGCAGCGCTtttgcgcttctcagcagaggaagctgATCTGCTTGATCACGCTGTGAAAGTGcgtgagcagctcatttaagggaacagtaattttattttattctgtattctgtttattgttgatgtaaaagttgggtttattgccatcagctgccagagccctgagagagcacaattgtgaGAAAGCTTggtctctctctgggtgggtacagtagatggcgctcttcccccacatcactctaaagggtgatgtggatcagcacatggcatctgtgagctgttgtatcagaattTCCTTAGAGTGCGCTGTGATTATActgggcaatgctgcatcagcagtaaattgggagaaaatgctaaaaaaaaaaaacttaaataaggtgtgaaaatagactgttggctgggtgtaagatagcaatgagcatctttatgagccttgcgcagggtgtaagataggacccaAAGTCTTCAGCTTCCAAAGGAAAAGAAATAAACGACAAAAAGTACCATATCAACCATGCTTACCTTTTGCGAGAGTTTTGCACAGTGCACctatcaagcataacattatgaccgcCTCCTTGTTTTTATATCAATTTTCCATCTATattatgtgtgttgtgttggtaggagtggatcagacacacacattaacacctcATGCACccccaccatgctaatcagtgctaatcactgcagtgctgagaataaacgatccatcacccaaataataataatccaggatgctctctgtggtgtttttcttTCCTGTGTGGTTCTGAATATTAAAGAACAGTGATGAAGGAAGATAATAAAACTATTGAGTGTCTTATAAGATCAGACGAGCTGATAAAACAATAGATGAAAGGGAAGAAATAAGCAACTTTTTCTGATAAAACTCCCAATGATGCTCCTCCTAAGTGTCCTTCTGCTGCTCCAGGATGAATTCGGACAGCTGGTTGATGTCAGTGAGGGCTGGGTGACACTgcagcatcatcatcaccacactGTCCTGCCCCGGAAAGATCTTCACCAGCTCCCGCTTCAGCTGCTGAGTCTCCTCCACCGACCTGTCCTTCACCTTCTCCCCCGGAGGAGACGGACTCCTGCCCGACTTCTGAGGTCTACCAGCTCCTCCTGGTGTCCGTTCACGATAATGCAGCACCTCGGTGTGAGCTCGAGGCTGGGAGGTGGGCGGGGGGAAGGAGGAGGCCACGCCTGCAAAGGAGTGGCTGGCAGGTAAGGGCGGGCTGAGGAAAAAGAGACAGCGTTAGAAAATCAttactgtatacatatatttaacaagctgaactgcttgaatttttgcaccaggagtggcatatcGTTAcgcaaaaacagtgtgtaagactggtggaggagaacatgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251079 True 2318 TUCP 0.40 2 17252267 17254633

Neighbor

gene id symbol gene type direction distance location
sfrp2 sfrp2 coding downstream 127516 17118052 ~ 17124751 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding downstream 139128 17089154 ~ 17113139 (-)
fhdc1 fhdc1 coding downstream 192605 17042875 ~ 17059662 (-)
npy2r npy2r,LOC107700264 coding downstream 377786 16871017 ~ 16874481 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding downstream 424913 16804577 ~ 16827354 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 175329 17429962 ~ 17501430 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 351472 17606105 ~ 17652838 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding upstream 408718 17663351 ~ 17675440 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding upstream 454218 17708851 ~ 17737741 (-)
LOC103045226 NA coding upstream 513747 17768380 ~ 17772217 (-)
G185280 NA non-coding downstream 36158 17204741 ~ 17216109 (-)
G185079 NA non-coding downstream 219875 17032131 ~ 17032392 (-)
G185073 NA non-coding downstream 282503 16966009 ~ 16969764 (-)
G185041 fgg,LOC106602564 non-coding downstream 329773 16921036 ~ 16922494 (-)
G185033 NA non-coding downstream 388061 16857391 ~ 16864206 (-)
G185328 NA non-coding upstream 102795 17357428 ~ 17360299 (-)
LOC111195245 NA non-coding upstream 116119 17370752 ~ 17429772 (-)
G185317 supt16h,LOC106577942 non-coding upstream 137238 17391871 ~ 17393833 (-)
G185318 supt16h non-coding upstream 140620 17395253 ~ 17397947 (-)
G185336 NA non-coding upstream 155577 17410210 ~ 17760211 (-)
LOC103032582 NA other downstream 11240 17230085 ~ 17241027 (-)
lrat lrat other downstream 350583 16898178 ~ 16901684 (-)
smim14 smim14 other downstream 1580313 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1871059 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1911687 15309509 ~ 15340580 (-)
G185311 emc4 other upstream 40868 17295501 ~ 17300782 (-)
nutm1 NA other upstream 58737 17313370 ~ 17328889 (-)
G185321 NA other upstream 75385 17330018 ~ 17331954 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 764089 18018722 ~ 18050369 (-)
apela NA other upstream 768489 18023122 ~ 18097691 (-)

Expression


Co-expression Network