G185321


Basic Information

Item Value
gene id G185321
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17330018 ~ 17331954 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251116
ATAAGGGGTTCATTtccccaaagaaaaaaaactcagagATTGAGAGttgagttaaaaatgtgaaaaattaattCATTACAAAATTCCAGAAGCAAAGGGTaaactgcagaaaaacagagagaaatgtTCTCCTGATTTAATAAAGTATCACATTTACTCAGATTAAAGAAAATGCTTCAATTAAACTGAggaaaattttcattttaaaatgatgtctCTAGACATTGTATAACAACATAATTATACAATTTTACTGGATagagtaaaacaaaatattacgCAACCAACATCACACAAACGTGTGCATGtgcacacgcaaacacacacttcATGTCCTTGATGTGTCCATTGTTTGGTGCTCTGTTACAGCACAGGTCGTGGCTGTTGGGTCAGCAGAAGTCCAAAGCGTTTCTTTATGGTCACTCTGTGCCGGGAGAACTTGTCATCAGGGGAGAATCGAGCTGGATGTGCAGAGCTGGTGGGCTGGCCTTCTGGATCCACTTTCTTCAGGGTGTAGACCCGCTCTCCGTTCTCGTTCAGGTAGAATTGCAGAAACATGGTTACAGCGCGGTTCCTCTGGAGTTTAGATTAGATGATCTGAAGCCTTTAAACCGGATTAAAGAGCTGAAAATGAGATAAATCAGCGCTTTACGAAGAACAGTCCAGTATCTGCGTACACCACGCGGTTCCTCTGCTCCTCAACACCACATCCGG
>TU251117
ttaaaagagaaaaccaAGAGAATCTATATTTACTACATAAACATGAAGATAATTGATGGTGAGTGTGATTAAAAAGCTGCTCATCCAGGCAAAAACAGACTATATGCTGGTTAATCAGCTATCAATTAGCATAGTGTTCAATATGTTGAATTTGATTTGCTTTTACTGATgttacagaggtgggccaatgtagtgtcaGGAGTCTTGCCCATGGCTCCACCAATTGATGTAGCACAGCATACGCACCCAGATTGGGAAttaaaccccagtctcccacatgtgccatgcagtggtgttatccactacaccacaccagtcacacaaacaacaaacacacaaagtgATGTTTAACAGCCAGTTAATCAGCTAGTTGGTCCGTTTTGGCCTGGATGCCTagtttcatataaaaaaaacacattaaccaTAAATGAGTATTTAAGACCATCTACCAGCTTCTTACCAGCTAACTTACCAGCAAAACCCTGCTCTTGAACTGATCAGTCTTGTTAACCAGATACAACCACCCAACTCATAATAACTAGTTACATGAGCTAACGTTACACTTTACTGGTGACGATATAAAAAGCTGGTCCACCACCCCAGACTAACTGAACCAGAATGTAAGATCTGAAcaacttcgttttttttttaccctacaTCAGCTTTTGGTTAGTAAAGTTAAGTGAGTAACGTTAAAGCGGATCAGGATCCGGATCAGACCTTCAGGGTGTAGACCCGCTCTCCGTTCTCGTTCAGGTAGAATTGCAGAAACATGGTTACAGCGCGGTTCCTCTGGAGTTTAGATTAGATGATCTGAAGCCTTTAAACCGGATTAAAGAGCTGAAAATGAGATAAATCAGCGCTTTACGAAGAACAGTCCAGTATCTGCGTACACCACGCGGTTCCTCTGCTCCTCAACACCACATCCGG

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU251116 False 714 TUCP 0.41 2 17330018 17331954
TU251117 True 930 lncRNA 0.42 2 17330018 17331006

Neighbor

gene id symbol gene type direction distance location
sfrp2 sfrp2 coding downstream 205267 17118052 ~ 17124751 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding downstream 216879 17089154 ~ 17113139 (-)
fhdc1 fhdc1 coding downstream 270356 17042875 ~ 17059662 (-)
npy2r npy2r,LOC107700264 coding downstream 455537 16871017 ~ 16874481 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding downstream 502664 16804577 ~ 16827354 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 98008 17429962 ~ 17501430 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 274151 17606105 ~ 17652838 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding upstream 331397 17663351 ~ 17675440 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding upstream 376897 17708851 ~ 17737741 (-)
LOC103045226 NA coding upstream 436426 17768380 ~ 17772217 (-)
G185280 NA non-coding downstream 113909 17204741 ~ 17216109 (-)
G185079 NA non-coding downstream 297626 17032131 ~ 17032392 (-)
G185073 NA non-coding downstream 360254 16966009 ~ 16969764 (-)
G185041 fgg,LOC106602564 non-coding downstream 407524 16921036 ~ 16922494 (-)
G185033 NA non-coding downstream 465812 16857391 ~ 16864206 (-)
G185328 NA non-coding upstream 25474 17357428 ~ 17360299 (-)
LOC111195245 NA non-coding upstream 38798 17370752 ~ 17429772 (-)
G185317 supt16h,LOC106577942 non-coding upstream 59917 17391871 ~ 17393833 (-)
G185318 supt16h non-coding upstream 63299 17395253 ~ 17397947 (-)
G185336 NA non-coding upstream 78256 17410210 ~ 17760211 (-)
nutm1 NA other downstream 1129 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 29236 17295501 ~ 17300782 (-)
G185295 NA other downstream 75385 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 88991 17230085 ~ 17241027 (-)
lrat lrat other downstream 428334 16898178 ~ 16901684 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 686768 18018722 ~ 18050369 (-)
apela NA other upstream 691168 18023122 ~ 18097691 (-)
G185890 LOC108443824 other upstream 2616128 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2785472 20117426 ~ 20127092 (-)
G185943 NA other upstream 3239235 20571189 ~ 20627262 (-)

Expression


Co-expression Network