G185328


Basic Information

Item Value
gene id G185328
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17357428 ~ 17360299 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251124
TCATTTCTGTCCAAAATCAGTTTATTTCGTTTGCTCTGAGATGTTAAGAGtcctttcttttaaaatatgaacgtaataaaaaataaaaacagaactcaGGTCTTCTTCATCGATACACGAGCAAAGATCTGTGAGAGACGGCAAGAACAGCGACCtcttcacataaaaaaatccatatgaCAAGCATTTCATGAAAAATCAACATCTCTCAACGTGGATTCCTAAAGCACACActcgcactcacacacacacacacactcatctcaaACACAAATGCAAAACAGCAGGACCACAGATACAATCATTGTAGAAGCGCAGGAGTTACAGTGCGGAGGCTGACAGCTCATAGTGGtcacttaatataaaaaaaaacaaaaaaagctaagCGAGAACTGCAGAAATCAGGTTCTTAAAGGAACACTCCAGTGGTTCTCAGCCTGATCTCCACCAGCAGCCAGGCCTGTTCCCAGAACTGCTTTTGATTGGCCGAACAATATTCTGTCACTAAAACTggaataaaactatttaaaatattctaaataaaacaaaGCCGACTGAAACCCCTTTAAAAAAAGGCTTCCAATATCTGTACACTCTCAACACAAATGGTTCTATGTATTTGCTGATAAGAAGGGTAGAACTCACTTTGTTGCTAAACAAAACCGTTTTTATAGAACCATCTAAAAATCCTTGAACCCTTAAAACCTCTAAACTCTTCTTAAAGTTGTCAGGGTTCCTCATAGAACTACAGActttactaaagaacccttATGTTAAAAACCCCTTGTTTATAAGATTCAAAGAAACCTTAAAAATGACACGCTTGAAAGATTCTTTAGTGGTTCTTTGGTAAAGACAACAGTTTTACATAGAACCATAAGATGTCTTTTGATGTTTAGATCTTTAGAGGTTCTTAGTGTGGATAACAAGGCTCTTCATTCTGAAAATGACTTCATGAACatcttttttgtgcttttgagAACCAGCTGTGATAGACTCTCTCTCCAGGCAAAGAACATTTAAGCATCCATGTTGAACCCAGTTGTCATGGTTCTACACAGAACAGTAGCCTTTAATAAAGAACCCTTAAATTACAGAACCCTTGTTTGTAAGACTGCATGAGTCAAAGAATCAGTCCTAGataactcttaaaactcctAAAAAAGTCCTTTGATAAAGGCATTGGTTCCACAAGGAACCTTGAGACATCTTTTGATGCTTAAATTGTTCTCTTTATTGGTTCTACTATCAGTACACTATGCATTAAAGGTTTGAAGGATTTTAGTGTGAGGTTCTCAGCTCTTTGATTTGCTTTTGTCGACCAATGTGAACAATCTTGGATACCTTTAACCAGGCAAAGAACAATGTAAGCATCCAAATGGTTCTGTAAGTTGTCACAGTTCTACACAGAACTTTAGCctttactaaagaacccttTGTTTTTAAGACTGTACAAGGCAAATGATCCTTTTTAAAGTACTATAAATGCACTGTATACTCTTATTCTTCAGCGGTTCGACACAGAACCAAAACATCTCTTTTGATGCTAATATGGTTCTTTTACTCTAAACAGatcatttgcatttttaaatgattctatATGTACAGATTTGACTGTAAAGATTGattacaaatgtgaaactcattttgGCGCTGTGTAAAGAATGTGGAGTCAAAGAAACCCACTCACAGTAATTTTCACTCCTAAAAAGGGTTCTTCAGTGGTTCTTTGGTAAAGTCAATGGTTCTATATGGAACCATGTGATGCTTACAGGTCAAAAAGGTCAAAAAGCCTAAATGTTTTACCAATGTAGTCGATATCAGTTCCACTACTATCTAGAACCTCATCACACAATGTAACCAGCACTGGGAGGGTTATAACCAGCACAGGCTTCCACAGATATCAAAAACTGATAATTATACTAATATTTATACTGATATGATTCTGATATTTTTGTGCGTACCTCAAGATTAGCCTGGGAAAACCTAAAGCTGGAGTATTCCTTTAAAGAACATCCACAGAACCCCAACACTCATTCTTCCACACGTTCCCCACACATGCGAGCATGCTGTCAGCCTGGACAGGTTTAACATCTTGGAAACGACACTAGAATGGCATGCGGAAAGTATTGGTCTCTAGATGAGCGGACGGATGTGCAACAGCGCCTGCTTCAGTATTGCTACGGAACCGCTTCCTTCCTTCAACAGAACCGGATTCATTAGAATCAGAATGACACAGAGCCATCATTCATTCATACggtcctcacacacacacttgaggTCCAGCATCAACCAGAACAAACCCTGAGTCAGTCCATGGAACACGCTCACTGTCCCACTGTGTGATAAATACGAGTGtgagtgtgcttgtgtgtatgaTTCCCCTATTAATTAATTGATCAACTGATCGGTCGCGGCGCTCATCTGTCATGTTCCCACAGCTTTCACCTTTACAAAACcttctctcgcacacacacacacactctctctttcacacacatacCGTTGTGGAACGCCGAAAACTGAACATTAGTGAAACTGTGAAAACTCgcaaatgagtgtgtgtggcgATAAACACAGGCTGATGTACGAATAAGCTGATGGTGGGAGGGGCTTGATAAAGCAGGCGGAGCTTTTTCACATACAGCCAATGATGAATCATTCAGTTCTACGTGACCCACCCATAAAGTCACGCTTCCCTTTGTTATCCTGTTTATGCTGTTGGCCGCCACCCTGCAGCCGATTCTTCGCTCAAGCCGTCCTCAGGAGTAGATAGTGATGACCTCACTTCCTCCACCCCGGACCAACAGGACGCGCTCCAGACCCTCTGTTAGAACCTCCAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251124 True 2846 lncRNA 0.40 2 17357428 17360299

Neighbor

gene id symbol gene type direction distance location
sfrp2 sfrp2 coding downstream 232677 17118052 ~ 17124751 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding downstream 244289 17089154 ~ 17113139 (-)
fhdc1 fhdc1 coding downstream 297766 17042875 ~ 17059662 (-)
npy2r npy2r,LOC107700264 coding downstream 482947 16871017 ~ 16874481 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding downstream 530074 16804577 ~ 16827354 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 69663 17429962 ~ 17501430 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 245806 17606105 ~ 17652838 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding upstream 303052 17663351 ~ 17675440 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding upstream 348552 17708851 ~ 17737741 (-)
LOC103045226 NA coding upstream 408081 17768380 ~ 17772217 (-)
G185280 NA non-coding downstream 141319 17204741 ~ 17216109 (-)
G185079 NA non-coding downstream 325036 17032131 ~ 17032392 (-)
G185073 NA non-coding downstream 387664 16966009 ~ 16969764 (-)
G185041 fgg,LOC106602564 non-coding downstream 434934 16921036 ~ 16922494 (-)
G185033 NA non-coding downstream 493222 16857391 ~ 16864206 (-)
LOC111195245 NA non-coding upstream 10453 17370752 ~ 17429772 (-)
G185317 supt16h,LOC106577942 non-coding upstream 31572 17391871 ~ 17393833 (-)
G185318 supt16h non-coding upstream 34954 17395253 ~ 17397947 (-)
G185336 NA non-coding upstream 49911 17410210 ~ 17760211 (-)
G185345 NA non-coding upstream 156187 17516486 ~ 17518272 (-)
G185321 NA other downstream 25474 17330018 ~ 17331954 (-)
nutm1 NA other downstream 28539 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 56646 17295501 ~ 17300782 (-)
G185295 NA other downstream 102795 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 116401 17230085 ~ 17241027 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 658423 18018722 ~ 18050369 (-)
apela NA other upstream 662823 18023122 ~ 18097691 (-)
G185890 LOC108443824 other upstream 2587783 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2757127 20117426 ~ 20127092 (-)
G185943 NA other upstream 3210890 20571189 ~ 20627262 (-)

Expression


Co-expression Network