G185345


Basic Information

Item Value
gene id G185345
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17516486 ~ 17518272 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251158
ctttgtcagattacctctaaattagctgagaatgaacatcagacacagttgatgaaaattgccaaaggaataattgatcgctaaaacggtgacgtaatggcgggcaattgattgactagagacgcaacactaaaccaaagtgaaaccatgacacagtcagaacacagatgattaaaaattcatgaaacttggcaaaaacacaagagacatcattagacacgttttcagtattggtaggactgactccgcccaacaggaagtcggccattttgaaatatctgaattttacatacatttgttGTGTAtattgtcaaactactcctagaaattttcttgaattctcttggtatttggtaaaaataaacattaaacatatctgatgataaattgtgaaggaatagtcgatatctcaaacgaggacgaaatggcagaTGGTTGAATTTGTGAGATGCCACATCAAAACAGGAGGTGAAAACCTAGGTAATGCCAGGTGTTTTGAGGAGGTTATAACGgagaaaaactcacaaaatttgaCCAGCCTGCTTATCTAAGGCTGTTGTTTgatgtagaattagaatttaaaatacatgtattttaacagcgctaTAGCGCTACCcgtattttaaatggatatttcacatgtttaacaggatagaaaactcttgaaaattggcacactcaataagaccttaaaattacttttatcggtttctcggtttggcccggtacgatttgcgctgttgtgcgagggccctacgtccccctgtgacagggggacaactcgtttgttttttttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251158 True 827 lncRNA 0.36 2 17516486 17518272

Neighbor

gene id symbol gene type direction distance location
LOC103027395 ptprdb,LOC107754148 coding downstream 15056 17429962 ~ 17501430 (-)
sfrp2 sfrp2 coding downstream 391735 17118052 ~ 17124751 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding downstream 403347 17089154 ~ 17113139 (-)
fhdc1 fhdc1 coding downstream 456824 17042875 ~ 17059662 (-)
npy2r npy2r,LOC107700264 coding downstream 642005 16871017 ~ 16874481 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 87833 17606105 ~ 17652838 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding upstream 145079 17663351 ~ 17675440 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding upstream 190579 17708851 ~ 17737741 (-)
LOC103045226 NA coding upstream 250108 17768380 ~ 17772217 (-)
LOC103031730 LOC108442776 coding upstream 256987 17775259 ~ 17782640 (-)
LOC111195245 NA non-coding downstream 86714 17370752 ~ 17429772 (-)
G185318 supt16h non-coding downstream 118539 17395253 ~ 17397947 (-)
G185317 supt16h,LOC106577942 non-coding downstream 122653 17391871 ~ 17393833 (-)
G185328 NA non-coding downstream 156187 17357428 ~ 17360299 (-)
G185280 NA non-coding downstream 300377 17204741 ~ 17216109 (-)
G185346 NA non-coding upstream 3102 17521374 ~ 17522168 (-)
G185354 NA non-coding upstream 49007 17567279 ~ 17567815 (-)
G185366 clock,LOC108260793,LOC107701480 non-coding upstream 159823 17678095 ~ 17681029 (-)
G185367 clock,LOC108434354,LOC107573987,LOC108260793 non-coding upstream 165315 17683587 ~ 17687706 (-)
G185373 NA non-coding upstream 181082 17699354 ~ 17700407 (-)
G185321 NA other downstream 184532 17330018 ~ 17331954 (-)
nutm1 NA other downstream 187597 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 215704 17295501 ~ 17300782 (-)
G185295 NA other downstream 261853 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 275459 17230085 ~ 17241027 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 500450 18018722 ~ 18050369 (-)
apela NA other upstream 504850 18023122 ~ 18097691 (-)
G185890 LOC108443824 other upstream 2429810 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2599154 20117426 ~ 20127092 (-)
G185943 NA other upstream 3052917 20571189 ~ 20627262 (-)

Expression


Co-expression Network