G185354


Basic Information

Item Value
gene id G185354
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17567279 ~ 17567815 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251173
cactgaccgctctgtgtctcttaaccaatcgtggagccggttcaaggagaaagtcccgcctttcaggagaaacagccaatcagcttgcaaaggagggtcagtgtggggaagccccccgtcgcagttggagctgctgatgttaaaacagatctggatatacagcgatttttctaaaagaaaggtaacggtaggctaatcatggaaactgtgatgagatttttctgatagctgcttaaaaatactcgtctccgaaacaaaacacacagattaaacctttaaaataaaaaaaatacagcttgtgactcagtttaactagaaatgtggagaggaccgaaatgaactgaactgatcaggggtggagtgatcaaaagaatcattttgcagaatttgtgcaccctttgttcaattttaaatccat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251173 True 418 lncRNA 0.42 2 17567279 17567815

Neighbor

gene id symbol gene type direction distance location
LOC103027395 ptprdb,LOC107754148 coding downstream 65849 17429962 ~ 17501430 (-)
sfrp2 sfrp2 coding downstream 442528 17118052 ~ 17124751 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding downstream 454140 17089154 ~ 17113139 (-)
fhdc1 fhdc1 coding downstream 507617 17042875 ~ 17059662 (-)
npy2r npy2r,LOC107700264 coding downstream 692798 16871017 ~ 16874481 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 38290 17606105 ~ 17652838 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding upstream 95536 17663351 ~ 17675440 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding upstream 141036 17708851 ~ 17737741 (-)
LOC103045226 NA coding upstream 200565 17768380 ~ 17772217 (-)
LOC103031730 LOC108442776 coding upstream 207444 17775259 ~ 17782640 (-)
G185346 NA non-coding downstream 45111 17521374 ~ 17522168 (-)
G185345 NA non-coding downstream 49007 17516486 ~ 17518272 (-)
LOC111195245 NA non-coding downstream 137507 17370752 ~ 17429772 (-)
G185318 supt16h non-coding downstream 169332 17395253 ~ 17397947 (-)
G185317 supt16h,LOC106577942 non-coding downstream 173446 17391871 ~ 17393833 (-)
G185366 clock,LOC108260793,LOC107701480 non-coding upstream 110280 17678095 ~ 17681029 (-)
G185367 clock,LOC108434354,LOC107573987,LOC108260793 non-coding upstream 115772 17683587 ~ 17687706 (-)
G185373 NA non-coding upstream 131539 17699354 ~ 17700407 (-)
G185386 NA non-coding upstream 195135 17762950 ~ 17764371 (-)
G185380 NA non-coding upstream 205839 17773654 ~ 17774182 (-)
G185321 NA other downstream 235325 17330018 ~ 17331954 (-)
nutm1 NA other downstream 238390 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 266497 17295501 ~ 17300782 (-)
G185295 NA other downstream 312646 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 326252 17230085 ~ 17241027 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 450907 18018722 ~ 18050369 (-)
apela NA other upstream 455307 18023122 ~ 18097691 (-)
G185890 LOC108443824 other upstream 2380267 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2549611 20117426 ~ 20127092 (-)
G185943 NA other upstream 3003374 20571189 ~ 20627262 (-)

Expression


Co-expression Network