G185366 (clock,LOC108260793,LOC107701480)


Basic Information

Item Value
gene id G185366
gene name clock,LOC108260793,LOC107701480
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17678095 ~ 17681029 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251192
GTCCAAGCAAAGACGTGACACTTTCAGAGACATAGATGACATTCCCATCTGTCAGAATAGCAAGAAAGAACCCGTCCAGTGCCTCCAGCATGAGCTGTGTGAACTCCTCGTTGCTAAGAAACGGGGGTTTCCAGTCCTGCCTGATCTCGCTCGACTCTGACTGTGCTGCAATTTcttTGTGTTTGCGCAGGTAGTCGATGCTTTTCTGCAAGATAGTCGACTTGTCCATCTTGCGGGTGTTTCCAGGCAACATGGTGCCCAATTCTTTGATGAGGACATTGAACTggtctctcctcctcttctcagATTTATTCCGGGAAACTCGTTTGGCCTTATCTCTGTCATCTTCCTCCATCAACCCATCAAAAATGCTGCCATCATCCCTGTCTATAGAGCTCATAGTGATGATGTTTCATGGGTCAGTCTGCAGAAAATACATTTGAAGCTTCGGGAAGACATTTGAAGTTCAAG

Function

symbol description
clock Enables E-box binding activity and histone acetyltransferase activity. Involved in several processes, including DNA damage checkpoint signaling; cellular response to ionizing radiation; and regulation of gene expression. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in chromosome; cytosol; and nucleoplasm. Part of transcription regulator complex. Implicated in Alzheimer's disease.

NR:

description
PREDICTED: circadian locomoter output cycles protein kaput-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251192 True 471 lncRNA 0.47 5 17678095 17681029

Neighbor

gene id symbol gene type direction distance location
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding downstream 2655 17663351 ~ 17675440 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding downstream 25257 17606105 ~ 17652838 (-)
LOC103027395 ptprdb,LOC107754148 coding downstream 176665 17429962 ~ 17501430 (-)
sfrp2 sfrp2 coding downstream 553344 17118052 ~ 17124751 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding downstream 564956 17089154 ~ 17113139 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding upstream 27822 17708851 ~ 17737741 (-)
LOC103045226 NA coding upstream 87351 17768380 ~ 17772217 (-)
LOC103031730 LOC108442776 coding upstream 94230 17775259 ~ 17782640 (-)
LOC103024247 NA coding upstream 162399 17843428 ~ 17847928 (-)
LOC103024551 LOC108442773 coding upstream 173525 17854554 ~ 17876383 (-)
G185354 NA non-coding downstream 110280 17567279 ~ 17567815 (-)
G185346 NA non-coding downstream 155927 17521374 ~ 17522168 (-)
G185345 NA non-coding downstream 159823 17516486 ~ 17518272 (-)
LOC111195245 NA non-coding downstream 248323 17370752 ~ 17429772 (-)
G185318 supt16h non-coding downstream 280148 17395253 ~ 17397947 (-)
G185367 clock,LOC108434354,LOC107573987,LOC108260793 non-coding upstream 2558 17683587 ~ 17687706 (-)
G185373 NA non-coding upstream 18325 17699354 ~ 17700407 (-)
G185386 NA non-coding upstream 81921 17762950 ~ 17764371 (-)
G185380 NA non-coding upstream 92625 17773654 ~ 17774182 (-)
G185378 NA non-coding upstream 102838 17783867 ~ 17825031 (-)
G185321 NA other downstream 346141 17330018 ~ 17331954 (-)
nutm1 NA other downstream 349206 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 377313 17295501 ~ 17300782 (-)
G185295 NA other downstream 423462 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 437068 17230085 ~ 17241027 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 337693 18018722 ~ 18050369 (-)
apela NA other upstream 342093 18023122 ~ 18097691 (-)
G185890 LOC108443824 other upstream 2267053 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2436397 20117426 ~ 20127092 (-)
G185943 NA other upstream 2890160 20571189 ~ 20627262 (-)

Expression


Co-expression Network