G185380


Basic Information

Item Value
gene id G185380
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17773654 ~ 17774182 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251207
GTTTCCCTCCGGACCGATTTTAAGGGCGCACAGCTGTATGTTAGTTTCCAGCTAAAGCAGGAAAgactgaaatgtatttttttctgagctgaaatgtgtttctgaCCATCTGTGAGTAGACTGTGTGTTCAGAACATAGAATAAACTAAAATGTAGAGATCAGTTTGTAAATAATAGGAATAAAAGGAATGTAGAGATCAGTTTgttgctgttctgctgttctgtgacctgttagcttgttagctgtCCGCTAAACTCATGTATACTGTGCTTATTTACTGTTGTATGTTAAGTGTGTATCATATAGCTGCTGATTGctccttttgtttttgtttgtagaCCATAATCAGCCATATTCAGCTCTGCATAGCTACATTCAGAATCAGCTTTATGCCTCTTATTGAACTgataaagtaaaaagaaatcATATCTATCACTATCAGGCTGCTCCTGAGGAGCACTGGTAATGTACAGTTACTACCCAATGTACTAATTTGGATTTAAAGCCAGCCAATGTAACGAACATTTC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251207 True 529 lncRNA 0.37 1 17773654 17774182

Neighbor

gene id symbol gene type direction distance location
LOC103045226 NA coding downstream 1437 17768380 ~ 17772217 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding downstream 35913 17708851 ~ 17737741 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding downstream 98214 17663351 ~ 17675440 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding downstream 120816 17606105 ~ 17652838 (-)
LOC103027395 ptprdb,LOC107754148 coding downstream 272224 17429962 ~ 17501430 (-)
LOC103031730 LOC108442776 coding upstream 1077 17775259 ~ 17782640 (-)
LOC103024247 NA coding upstream 69246 17843428 ~ 17847928 (-)
LOC103024551 LOC108442773 coding upstream 80372 17854554 ~ 17876383 (-)
LOC103031415 LOC108442772,LOC107570622,LOC106951372,LOC102787328,LOC103153163,LOC103472754 coding upstream 121381 17895563 ~ 17937588 (-)
LOC111195249 NA coding upstream 201931 17976113 ~ 17977956 (-)
G185386 NA non-coding downstream 9283 17762950 ~ 17764371 (-)
G185336 NA non-coding downstream 13443 17410210 ~ 17760211 (-)
G185373 NA non-coding downstream 73247 17699354 ~ 17700407 (-)
G185367 clock,LOC108434354,LOC107573987,LOC108260793 non-coding downstream 85948 17683587 ~ 17687706 (-)
G185366 clock,LOC108260793,LOC107701480 non-coding downstream 92625 17678095 ~ 17681029 (-)
G185378 NA non-coding upstream 9685 17783867 ~ 17825031 (-)
G185389 NA non-coding upstream 32905 17807087 ~ 17881087 (-)
G185393 NA non-coding upstream 115191 17889373 ~ 17892265 (-)
G185428 LOC103022477,LOC108434314,LOC108260671 non-coding upstream 221917 17996099 ~ 17997259 (-)
G185402 smc2,LOC107746033,LOC107702366,LOC107656012,LOC107551560 non-coding upstream 233559 18007741 ~ 18009805 (-)
G185321 NA other downstream 441700 17330018 ~ 17331954 (-)
nutm1 NA other downstream 444765 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 472872 17295501 ~ 17300782 (-)
G185295 NA other downstream 519021 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 532627 17230085 ~ 17241027 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 244540 18018722 ~ 18050369 (-)
apela NA other upstream 248940 18023122 ~ 18097691 (-)
G185890 LOC108443824 other upstream 2173900 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2343244 20117426 ~ 20127092 (-)
G185943 NA other upstream 2797007 20571189 ~ 20627262 (-)

Expression


Co-expression Network