apela


Basic Information

Item Value
gene id apela
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 18023122 ~ 18097691 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251265
CCGTCCTTCTTCTCCAGAGCTCTTCCCTCCTTCTCCAGCTCTCCGCCTCCTCCCTCTGTTCTGCTTAAAGAGGGGGAGCGCCCCACATTGTTCAGAGTGGACATTCACACTGACCACGggtcatccatccatcctgagagaaaaggagagagtgCACAAGTCACACACAGAGAGCAGGACTTCTGCTGGACTTCCCAACCTCTGGAgatcttctcctcctcctcactgaCCTCAGCCTGAAAAGAGACAGAAGATTTAAACAGAAGGAGAGAAACCAGGTGACCAGGACTACACAGATCTTCACCAGGAGCTCAGGAGCTGAACCTAAACTCCTTAACTCAACATCTCGCCTTCTTATCTCATATTTTACCTTCATCCACCCTCCTGAGGAGATTCCCCAGCAGAGCCATGAAGGTCCTACAGCCGCtctacctgctgctgctgctactggtTGTAGTTGCGATGGTAACCAGCGCTCTGAAACCAGattttctgaatTTGAGGCGAAAGTACCGGAGACATCACTGCCCACACAAGCGCTGCCTCCCCCTACACTCCAGAGTACCCTTCCCCTGAGcTGGATGAGCACAGATAGCTAAACGTCCAAAGACTGGCAGACCGGAGAAGAAGCACAACCTCAATATAACCGAGGGTCAGAGCTGTCACAATCAATCAGCACGGCATCGACCAATCACCAAAGATCTTCTCACACAGGCTGATTTCCTGTGCCAATGGCTGCCGCTTCCTGCGCCGCACAATGTGAAACGGAAGACACAGAAGTGTACGGGTCAAGAACCCGAGCTAAGAGCTGATAAAGGACTGATTTACAGCCTGCAGTTTCAGCTGCCACAGTGCTAACGAGCAATATCAATCTAATGTAAATAGCATAGACCAAGCGAAATGTGTTTATACGTAAGTTATGCActtcaaaatgtttttattttattcatgttaaataaaaagtattctTTTTGAGAAAAAAACaaaaaaaaaaacagcatttaagaTCTGATTACCAGCAGGTTTCACTCTCGGTGTTCAATCTCAAAGTAGCCTAAATCCTACATTCCTCAACACCTCCTAAGTGCCGCACGGAGCGAGTGCCGGACTGAACATGTGACGGAATAACTGAGTGACTGGCTGACTGAGTACCAGACTGTACAA
>XM_015600722.2
CCTTCTTCTCCAGAGCTCTTCCCTCCTTCTCCAGCTCTCCGCCTCCTCCCTCTGTTCTGCTTAAAGAGGGGGAGCGCCCCACATTGTTCAGAGTGGACATTCACACTGACCACGggtcatccatccatcctgagagaaaaggagagagtgCACAAGTCACACACAGAGAGCAGGACTTCTGCTGGACTTCCCAACCTCTGGAgatcttctcctcctcctcactgaCCTCAGCCTGAAAAGAGACAGAAGATTTAAACAGAAGGAGAGAAACCAGGTGACCAGGACTACACAGATCTTCACCAGGAGCTCAGGAGCTGAACCTAAACTCCTTAACTCAACATCTCGCCTTCTTATCTCATATTTTACCTTCATCCACCCTCCTGAGGAGATTCCCCAGCAGAGCCATGAAGGTCCTACAGCCGCtctacctgctgctgctgctactggtTGTAGTTGCGATGGTAACCAGCGCTCTGAAACCAGattttctgaatTTGAGGCGAAAGTACCGGAGACATCACTGCCCACACAAGCGCTGCCTCCCCCTACACTCCAGAGTACCCTTCCCCTGAGcTGGATGAGCACAGATAGCTAAACGTCCAAAGACTGGCAGACCGGAGAAGAAGCACAACCTCAATATAACCGAGGGTCAGAGCTGTCACAATCAATCAGCACGGCATCGACCAATCACCAAAGATCTTCTCACACAGGCTGATTTCCTGTGCCAATGGCTGCCGCTTCCTGCGCCGCACAATGTGAAACGGAAGACACAGAAGTGTACGGGTCAAGAACCCGAGCTAAGAGCTGATAAAGGACTGATTTACAGCCTGCAGTTTCAGCTGCCACAGTGCTAACGAGCAATATCAATCTAATGTAAATAGCATAGACCAAGCGAAATGTGTTTATACGTAAGTTATGCActtcaaaatgtttttattttattcatgttaaataaaaagtattctTTTTGAGAAAAAAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251265 True 1164 lncRNA 0.48 4 18023122 18097691
XM_015600722.2 False 979 mRNA 0.48 3 18090698 18097687

Neighbor

gene id symbol gene type direction distance location
LOC103023299 NA coding downstream 32738 17986269 ~ 17990384 (-)
LOC111195249 NA coding downstream 45166 17976113 ~ 17977956 (-)
LOC103031415 LOC108442772,LOC107570622,LOC106951372,LOC102787328,LOC103153163,LOC103472754 coding downstream 85534 17895563 ~ 17937588 (-)
LOC103024551 LOC108442773 coding downstream 146739 17854554 ~ 17876383 (-)
LOC103024247 NA coding downstream 175194 17843428 ~ 17847928 (-)
map3k4 map3k4,LOC107739870,LOC107705416 coding upstream 100759 18198450 ~ 18231271 (-)
LOC103028955 LOC108415761 coding upstream 250576 18348267 ~ 18357795 (-)
tarbp1 LOC108416131 coding upstream 260188 18357879 ~ 18390033 (-)
LOC103046077 LOC108415085 coding upstream 296512 18394203 ~ 18419920 (-)
fam135a fam135a coding upstream 344725 18442416 ~ 18482171 (-)
G185402 smc2,LOC107746033,LOC107702366,LOC107656012,LOC107551560 non-coding downstream 13317 18007741 ~ 18009805 (-)
G185428 LOC103022477,LOC108434314,LOC108260671 non-coding downstream 25863 17996099 ~ 17997259 (-)
G185393 NA non-coding downstream 130857 17889373 ~ 17892265 (-)
G185389 NA non-coding downstream 142035 17807087 ~ 17881087 (-)
G185378 NA non-coding downstream 198091 17783867 ~ 17825031 (-)
LOC103047599 NA non-coding upstream 17350 18115041 ~ 18125528 (-)
G185445 NA non-coding upstream 34818 18132509 ~ 18141223 (-)
G185444 NA non-coding upstream 38114 18135805 ~ 18148838 (-)
G185443 NA non-coding upstream 42311 18140002 ~ 18149939 (-)
G185458 kcnk1,kcnk1b,LOC108415485,LOC107654970,LOC107705375,LOC107680317,LOC107553189,LOC107602917 non-coding upstream 146338 18244029 ~ 18248882 (-)
G185321 NA other downstream 691168 17330018 ~ 17331954 (-)
nutm1 NA other downstream 694233 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 722340 17295501 ~ 17300782 (-)
G185295 NA other downstream 768489 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 782095 17230085 ~ 17241027 (-)
G185890 LOC108443824 other upstream 1850391 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2019735 20117426 ~ 20127092 (-)
G185943 NA other upstream 2473498 20571189 ~ 20627262 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other upstream 2542647 20640338 ~ 20678614 (-)
G185990 NA other upstream 2650473 20748164 ~ 20752273 (-)

Expression


Co-expression Network