G185443


Basic Information

Item Value
gene id G185443
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 18140002 ~ 18149939 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251296
GCTATAGTAGAAATCTATGAACAGGTTTGTATATAATTAGTTTACATATGCAGATAGTATGTTTGTAGTTAAATTAGGTGTACGCTTGGGCCAATCAGAAGAGTACCAGGATCGCTACAGAGCTCGGATGACTAGCTACTCAAGGAAACAACTTGGCACTGTTGGACATTGGAAAAGTGCATTCACAATTTATTACAATCaggtaagaaaataaaaaacatataaaacaaagaaTATAGATAATTCTAACCCgggtagaaaaataaatataaattcttaggaaaatattcaaaatgttcaatgtaacaatataattaACTCAATTAGAAATGGATTTAGAATTCAATAACAATAcagaatgtgtttgtttgtgtgagtgttaaTGTCCTTTGCTCTTTTGTTCCACAGGTGATGGATTCAGTCCATGGAGTTTGCAATGGTAAGTGTTCCTCCTACCAGTTCACAGAGCTCAAAAACAAGGATCAGTTCACAGGGAGTCCACGGAAAGTAGAAAAACCCTCTAGGTTAGGGTCTGGGAGGCTCGCCATCAAATGGTTTGTCCAACTTGATCGTCCGATCAAAAAAACCTGACCAGTGTAAAAGGGTAATAAACTCGTCGTTCTTCGACGAAACACTCTCCACAGACTACGCGCTTCCTGCTCAGCGACAGGTTAATAAAGTTAGGAAATAAGCTGTCGACACTTAATTTTAgcctaaaactgtgttttctctcttttgcagCTGGAGAACCCTCCGTCTCGTCTGCTGGCTGGAAGTGAACAGAGCGCGGATCTCCGTCAGAGTGAATGAGAACTCCCACATCTCTCCAAGCCGCCACCCGATTGGCCGGCTGGATTTAATGTAAACCAATaggaaaaatgctaaataaaataaatacaaatgttattttgtattcctgtatttatttatagcgAACTATTTCTTTCTTAATTAGCTTAGTAGTCAcactatttaataatattataataattaaattatatatatgtatattatatttaattaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251296 True 1026 lncRNA 0.36 2 18140002 18149939

Neighbor

gene id symbol gene type direction distance location
polr1e NA coding downstream 68364 18065689 ~ 18071638 (-)
LOC103023299 NA coding downstream 149618 17986269 ~ 17990384 (-)
LOC111195249 NA coding downstream 162046 17976113 ~ 17977956 (-)
LOC103031415 LOC108442772,LOC107570622,LOC106951372,LOC102787328,LOC103153163,LOC103472754 coding downstream 202414 17895563 ~ 17937588 (-)
LOC103024551 LOC108442773 coding downstream 263619 17854554 ~ 17876383 (-)
map3k4 map3k4,LOC107739870,LOC107705416 coding upstream 48511 18198450 ~ 18231271 (-)
LOC103028955 LOC108415761 coding upstream 198328 18348267 ~ 18357795 (-)
tarbp1 LOC108416131 coding upstream 207940 18357879 ~ 18390033 (-)
LOC103046077 LOC108415085 coding upstream 244264 18394203 ~ 18419920 (-)
fam135a fam135a coding upstream 292477 18442416 ~ 18482171 (-)
LOC103047599 NA non-coding downstream 14474 18115041 ~ 18125528 (-)
G185402 smc2,LOC107746033,LOC107702366,LOC107656012,LOC107551560 non-coding downstream 130197 18007741 ~ 18009805 (-)
G185428 LOC103022477,LOC108434314,LOC108260671 non-coding downstream 142743 17996099 ~ 17997259 (-)
G185393 NA non-coding downstream 247737 17889373 ~ 17892265 (-)
G185389 NA non-coding downstream 258915 17807087 ~ 17881087 (-)
G185458 kcnk1,kcnk1b,LOC108415485,LOC107654970,LOC107705375,LOC107680317,LOC107553189,LOC107602917 non-coding upstream 94090 18244029 ~ 18248882 (-)
G185556 NA non-coding upstream 386475 18536414 ~ 18537570 (-)
G185555 NA non-coding upstream 390358 18540297 ~ 18540893 (-)
G185563 NA non-coding upstream 507780 18657719 ~ 18740533 (-)
G185606 NA non-coding upstream 767429 18917368 ~ 18918295 (-)
apela NA other downstream 42311 18023122 ~ 18097691 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other downstream 89633 18018722 ~ 18050369 (-)
G185321 NA other downstream 808048 17330018 ~ 17331954 (-)
nutm1 NA other downstream 811113 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 839220 17295501 ~ 17300782 (-)
G185890 LOC108443824 other upstream 1798143 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 1967487 20117426 ~ 20127092 (-)
G185943 NA other upstream 2421250 20571189 ~ 20627262 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other upstream 2490399 20640338 ~ 20678614 (-)
G185990 NA other upstream 2598225 20748164 ~ 20752273 (-)

Expression


Co-expression Network