G185458 (kcnk1,kcnk1b,LOC108415485,LOC107654970,LOC107705375,LOC107680317,LOC107553189,LOC107602917)


Basic Information

Item Value
gene id G185458
gene name kcnk1,kcnk1b,LOC108415485,LOC107654970,LOC107705375,LOC107680317,LOC107553189,LOC107602917
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 18244029 ~ 18248882 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251317
gtttcagacaggaataaaatcacagaggaccccctgagaaactaatcccattcgGATAGGGCTTTAAGTCACCTGTAAATCAGCCGATTCTGATTGTGTTCCTTAAAAATGTAATGCTctaaaataaatcacaaaatCAACAAGAGATTTCATGAAAATCACAAactttatttgctttaaaaaaaacaacttttacagaTGTTCAGAAACTGCTATAATCCACTGCTGGCCACGAGGCCTGAACGTGGAGCTCAGTTACTGTATCTCAgctacttcccaacactgacgACAAAAttcatacagtaaatatgtCACAGTAGAGCATGTTCAAGTTCCCTTTGTTAAAGGTGTACAGAGGTTACAATCAACCTCCAcatgaaatacacagaaaatcaCGTCACTGTCAGCGGTAAAAAAGCAGGCATGGATTCTTCAACATGTTCACCAGGAACGATTTACAACATTGCAAGACAAATGCAATTAATCTCATAATGTGAAGAATGAAAAGGCAGGACCTCCTTTTAAACATACCCAGAATTTACATAGTcttataaacacaacagcaatatacaaatatacacttGTAAACAATCTCCCAGAATTCTGTGTACAATTCCTTTTATTCCTTTAAAGGGAACCTTGACTGATAAGAACTGAAAcataattatacatatatagaaatatctacagctctggaaaaaattaagagaccacttcagtttcagaatcCAATTCTCTgatagaaatcaatatttggtggaataaccctgttttttaatcacaccattcatgcatcttggcatgttgtcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagcttggtttgatggctggtgATCATCCCttatcctcttgattatattccagaggttttttaattaggtaaaaacaaagaaacttataattttttcagagctgtatatagaaatatatatgtgtgtggcCTGCACAAGAAGCCAATGCCACTGTGAGCATTTACATGTGTGTATCGCTCTGCAATGAcaccattaaaacacaaaattgcaatattattaatatatgacGTAATATCATAAGGGAAATTTTTTGACCAGTTTGAAAGTTTGAaagtttttaaccaataaagCATTGCTCTTGGGCGATGACTGACATGCTCTACATGTCTTTACAGTCAGGGTTCCCTTTGAATCGTAATAGTCAAGTTTTCAATACAAACATTTCAGAAATTAAGGTTAAGTCAGTTTTATTACACTTTAATTTAAACGTACCTCAGACATTTAGGTAAATATCAGCACTGAAACATCTCAATAGTACCTCAACACCGTGGATTTATAGGCCTTCTAGCCTATAATGTACCCTCAGCAGGATTTGCCAAGTAGAAATGTTTAATACTCAAGTAATTCCAGCCCTTCTAATTCCTTTTTATCccttttttggttttctttcaTTCAGTGTGCTGTCTGTGACTGCAAGTCTGAAACGGAGGAAATCTACCTTTCCACATCTACAGTAGCGTATGGACGCTCTAGAGACAGGAACACAGCACAAGGCCTGTACAGCGCTCAAGGTAAGACTGAAATATAGTGAACGGACATATGTGGACAGCCCTCAAACTCAATTCAGATTCAACTTAGACTTTTCAGACTTTATAGGTCTTTAGATATGGACCTTAAATACAGTTAACAGTCCTGGATTTCTAATGTGgccattaaattacattaacagCTGACTTAACTTCCAGCCAGAACAAAGTATATAGGAAAGGAACAggttttaaaggggacatattgtGCAAAACatccttttttgtgcttttgtatTCCTAATTGGGTCTCAATTgtctctataaacactccaagtacCAAAAaatccatctgttttctgtgaatcagcaaAAAAATGAGCCGTTTTGATGCTCCTCCTTATTGTAAtgtcacaataaaataaacctgCATAGAACTGCCCTGGCACCACCTCTTACCTACACAGCAGgaatagccagcagactttgtttgagggaggaatctgtacctactttttgtggcaagtcagcagattagggagatgtaagaactttcaaataatgggttttgtgcttctgtcgcagttaagcatgaactatcTTGTTCGGGTTTTATCCccgggcgtggccagcaacagtttatttgcataaaagtgacagagcccttaaacggttcattctgaaagagactgaaatTGGTAAGAATTTCTCTTTAGAGATATCTAAAAGTAAATTGTGAACAAACAGATATAATATGTCCCCTATAAGGTCCAgatttaaagagctctgtcacTGACTGagcacattattagaaacactatagGCTATAGATTCTGGTCCACGTTGACATGACTGCATcactataaaataattaaattgaattagaTTATTGTATAAATGAGCAGGTTTTACaaatgttcctaataaagtgcttTGTTTAAACAGTTCTAATGATACTCTGTTCAATAGACAACTGCAACTGTTGGGTTAAAACTGACCACATGATGCCATTTATCTATTGTAATCAAtaatcatttcttttttctacAGTTCACACATTAATACTCTACACTGCAGTAGTCTAATGGTCTAAACTTAACTGTAGAGTTATATAATCACATCCACAGATGATATGTTATGATAATAACGGAGTTTATCATTTATAGTCCATATGTATTCTGTACATCAACATGTAATATGTCTGTAATAACGGAAACCTATCAAGAACCTCTTAAGGAAATGAGTCTAAAGCTAACCTTCTACATGCagttctgtttatactgtagTCTGATACAGTctgattttatgagtaatttacAGAATGGTGCGGCCAATCATCACAGTTAATGCCTTAAACAGGCCAATCTAGAGATTCCATCTACAGATAAATCCATCGTAGGGCTTAAAGGGACATCAGAGGCATCTTTTCCACTGCAAGGCAATCATTCAGCAATTGAGGAGCAATGTTGGATGAACCCAGTCATTGGAGTGCTTATGCTATGCTAGCAATGTTGGACATGGACAGTCAACAGAGTGCTAATGTTGTGCTAGCGTTGTTGGACATGGCCAACCACTGgagtgctaatgctaagctagcAATGTTGGACAAGGCCAATCACTGGAATGCTAATACTACAGTAGCGATGTTGGATGAAGCCAGTCATTGGAATGCCAATGGTATGCTAGGAATTTTGGACAAGGCTGGCCACtggaatgctaatgctagcaaTGTTGGACAAGGGCTACCACTGGAATAATAATCATATGCTAGCGTTGTTGGAAGAGGCCAGTCTTTgagatgctaatgctgcaatcTTGGATAATCCCAGATACCATTTTTTTGTTGGTAGAaaattttctgaatgttacggTCAAaatttctggatgttcttagtttttatttaatgtaaacttTAAGCAAATGTCATTGATGGATTTTAATGGATTTATCTAACTGGAGATACAGTTGTTTTAACTCGTAGTTTTGGTAATGttaattttttgtaatatttccataatgttaatatttgtcTAGCTGGTATGGTTACGtgagaaacgttctaataatgttgtgatgcaaaGTCACTTGCTTTTAGaacgttcctggaacattatttctgtaatgttacaggctaTCCTTCCTGGAGCCTTTTCAAAACGTTgttaaacattcttataacgTTCTCACTTAGCATGCTTTGTTGTTGCTAAATCAGGGTGGCAATGTAAAACTAGAGGCACCTGGTTTACTGGTTTAGCAATGCagtaaatggaaaaagaaagcgTAATGCATGGTTTTAAAACGTTAAATATTACAGTACAGCTTTCTTAAATGTTTAGACCTGCAGTGGAAGAGAGGCCAAATACTAGAATTAAAGCAAAGAATTGAGGATTGAAGATCTCTAGACTCGTCAAACACGAAACAGCGTTCCAGGTTgtgctgaatatatatatatatatatatatatgatcaaAGCTCACTATGCTAGATTATGTTGGCTATAGGTATAATCTAGTCAGATCATGTCCAGTGCCGGATAATCCTAATATTGTGCTATAAGACCCTTTTtcagtttgtctgtctgtctgtttgtttgtttgtttaaagtgCAGGACTGAGGTGAAGAAGAACACTGTGGAATGTTGAGAGTATATAACGTATCATTTACAgtatatcatttatatataatcacagccGTATGTGAGCTACTACCCAGCACACAGAATCAGGAGCTACTGTACGTGTTTTTTATGCGCTGAAGACCACTGTGCCACTACGCTGTGCGCTGACGGATGGATGGGTTCACGATGATCGACGATGGGTCTAACCGTGGGCTTATCTGATCATAGGATCGTCTCCCCCCGGGGACGTGAGGACGGGGACGTCCACGAAGGGCTCGCTCTTCTCCTCCTGGGGCGATGTGGCGTGGTCCACCGAGGAGAAGGCCAGGTGGTCGTGCTCCATGATGGCCTGCTGGTCCTGAGGCTTCTCCTTCTTCAGGTAGAACATCTTCCTCAGCTGCTTCAACTGCTGCAGCTCGCAGAACGTCTCCAGAACCACCAGCATCGCGATCAGACCCAGCAGGAGATAGACTGCAGgataaagaggaggagagagagggaagagacgGTAAGAGTAGAGGTTTCTAGGTTATTTCTTTACATTTGGGTTTTGAGACACACAATATGACAAGGTTAGCCTAAGGAGGATATTAT

Function

symbol description
kcnk1b Enables potassium channel activity. Acts upstream of or within heart process. Predicted to be located in several cellular components, including perikaryon; recycling endosome; and synaptic membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and heart. Orthologous to human KCNK1 (potassium two pore domain channel subfamily K member 1).
kcnk1 Enables identical protein binding activity; potassium ion leak channel activity; and sodium channel activity. Involved in potassium ion transmembrane transport; regulation of resting membrane potential; and sodium ion transmembrane transport. Located in intracellular membrane-bounded organelle. Is integral component of plasma membrane. Part of potassium channel complex.

NR:

description
potassium channel subfamily K member 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251317 True 4785 lncRNA 0.38 2 18244029 18248882

Neighbor

gene id symbol gene type direction distance location
map3k4 map3k4,LOC107739870,LOC107705416 coding downstream 12758 18198450 ~ 18231271 (-)
polr1e NA coding downstream 172391 18065689 ~ 18071638 (-)
LOC103023299 NA coding downstream 253645 17986269 ~ 17990384 (-)
LOC111195249 NA coding downstream 266073 17976113 ~ 17977956 (-)
LOC103031415 LOC108442772,LOC107570622,LOC106951372,LOC102787328,LOC103153163,LOC103472754 coding downstream 306441 17895563 ~ 17937588 (-)
LOC103028955 LOC108415761 coding upstream 99385 18348267 ~ 18357795 (-)
tarbp1 LOC108416131 coding upstream 108997 18357879 ~ 18390033 (-)
LOC103046077 LOC108415085 coding upstream 145321 18394203 ~ 18419920 (-)
fam135a fam135a coding upstream 193534 18442416 ~ 18482171 (-)
LOC103045151 col19a1 coding upstream 285245 18534127 ~ 18571709 (-)
G185443 NA non-coding downstream 94090 18140002 ~ 18149939 (-)
G185444 NA non-coding downstream 95191 18135805 ~ 18148838 (-)
G185445 NA non-coding downstream 102806 18132509 ~ 18141223 (-)
LOC103047599 NA non-coding downstream 118501 18115041 ~ 18125528 (-)
G185402 smc2,LOC107746033,LOC107702366,LOC107656012,LOC107551560 non-coding downstream 234224 18007741 ~ 18009805 (-)
G185556 NA non-coding upstream 287532 18536414 ~ 18537570 (-)
G185555 NA non-coding upstream 291415 18540297 ~ 18540893 (-)
G185563 NA non-coding upstream 408837 18657719 ~ 18740533 (-)
G185606 NA non-coding upstream 668486 18917368 ~ 18918295 (-)
G185619 NA non-coding upstream 968099 19216981 ~ 19217727 (-)
apela NA other downstream 146338 18023122 ~ 18097691 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other downstream 193660 18018722 ~ 18050369 (-)
G185321 NA other downstream 912075 17330018 ~ 17331954 (-)
nutm1 NA other downstream 915140 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 943247 17295501 ~ 17300782 (-)
G185890 LOC108443824 other upstream 1699200 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 1868544 20117426 ~ 20127092 (-)
G185943 NA other upstream 2322307 20571189 ~ 20627262 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other upstream 2391456 20640338 ~ 20678614 (-)
G185990 NA other upstream 2499282 20748164 ~ 20752273 (-)

Expression


Co-expression Network