G185556


Basic Information

Item Value
gene id G185556
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 18536414 ~ 18537570 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251483
AAATTAGAAAATCTAAAAGAGTCCTCACAAGAATATCAAAACTATTGTTtgtctgtattttctgtatttgtatatgtatggTACTTGGGTACTACTGCTGTAAAGTAGAACAGGCTAAAATCATTTTACATTATGTTATGTTACAGAAAGCCCGGTCCAGAGTCAGAACCATGctttatgtgtttgttacatCGTATTCTCTACTGTATTTAGTCGCTAtagtttcggtttcacactgTACTAAACACGGATTGGTTCGTAGAATGGTGTTTGAGCATTGATTGTTACCAATTTGTTGAGTTGCCTTTCCAAGTGTTCTGCCTCGgattctttttatttctgtttataaataagcattaatctacagttacagcagatacagaatcaccagcaacactgcttctttttcgtcttctattgtttattgggtgcaaaaaaaaaacatttaacttgAAACCCAACAAAATGTAGCAACTCATCTATAGCAACAGCCTACCAGGCTAATTTTCaacataattacagttttttaggGGGGCAGAGCATGCTTACATAAACCATTGTGATTCAATAGATTAttctgtaccactttaaaataaggctcctttataaagggtttataaaggagtttaataCTCGTTATTTATTAGGTTATAAACTGCAAATAAGCAATGTAGCAAATAGTGATTCCATAGTCATTTACTACTAGATACTTATCTCACTTTGTCCATCAGTCATCATTAACTTAATTTCTGTTAATAatgttattcatttaaatataaaaacatattaagtgactaatcagatttttttattgttgaattagatatttttaaaaaaaactcacttaaacttaatttataaccattaattaattgctttataaaatatttatagaccctttataaaggggccttattttaaagtggtaccgattgTAACTGTCTGatgaaaaacaatgaaaaagttctcatttttgtcaatttttagttttctgCATAATTTTAACACAAACTGTCAATTGTTTCATGAATTcacagaaattctccaaaattacttaAAGTGAACTCTTTTTGCATTgactttaattaaattttaagaatgtatttttttttcttgtataaaTTAGCTGTTTTCGAgctgcatgtttttcattggtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251483 True 1157 lncRNA 0.30 1 18536414 18537570

Neighbor

gene id symbol gene type direction distance location
fam135a fam135a coding downstream 54243 18442416 ~ 18482171 (-)
LOC103046077 LOC108415085 coding downstream 116494 18394203 ~ 18419920 (-)
tarbp1 LOC108416131 coding downstream 146381 18357879 ~ 18390033 (-)
LOC103028955 LOC108415761 coding downstream 178619 18348267 ~ 18357795 (-)
map3k4 map3k4,LOC107739870,LOC107705416 coding downstream 305143 18198450 ~ 18231271 (-)
col19a1 col19a1,LOC107747287 coding upstream 39484 18577054 ~ 18744602 (-)
adgrb3 adgrb3,LOC107665593,LOC107736840,LOC107664175 coding upstream 412945 18950515 ~ 19272872 (-)
LOC103035966 NA coding upstream 833491 19371061 ~ 19374831 (-)
LOC103034392 LOC108443823 coding upstream 1384773 19922343 ~ 19940651 (-)
LOC103042714 eml5,eml6,LOC106608004 coding upstream 1415552 19953122 ~ 20020037 (-)
G185458 kcnk1,kcnk1b,LOC108415485,LOC107654970,LOC107705375,LOC107680317,LOC107553189,LOC107602917 non-coding downstream 287532 18244029 ~ 18248882 (-)
G185443 NA non-coding downstream 386475 18140002 ~ 18149939 (-)
G185444 NA non-coding downstream 387576 18135805 ~ 18148838 (-)
G185445 NA non-coding downstream 395191 18132509 ~ 18141223 (-)
LOC103047599 NA non-coding downstream 410886 18115041 ~ 18125528 (-)
G185555 NA non-coding upstream 2727 18540297 ~ 18540893 (-)
G185563 NA non-coding upstream 120149 18657719 ~ 18740533 (-)
G185606 NA non-coding upstream 379798 18917368 ~ 18918295 (-)
G185619 NA non-coding upstream 679411 19216981 ~ 19217727 (-)
G185627 NA non-coding upstream 721572 19259142 ~ 19259938 (-)
apela NA other downstream 438723 18023122 ~ 18097691 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other downstream 486045 18018722 ~ 18050369 (-)
G185321 NA other downstream 1204460 17330018 ~ 17331954 (-)
nutm1 NA other downstream 1207525 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 1235632 17295501 ~ 17300782 (-)
G185890 LOC108443824 other upstream 1410512 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 1579856 20117426 ~ 20127092 (-)
G185943 NA other upstream 2033619 20571189 ~ 20627262 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other upstream 2102768 20640338 ~ 20678614 (-)
G185990 NA other upstream 2210594 20748164 ~ 20752273 (-)

Expression


Co-expression Network