LOC111195252 (LOC108260666,LOC108412153)


Basic Information

Item Value
gene id LOC111195252
gene name LOC108260666,LOC108412153
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 20117426 ~ 20127092 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251936
ctttacaaaaagtgtgattaatcacaggtAATTTATAGgcttggtttggatagttttttccctttttatatttactcaggttatattaaattatactttttcaggctactgtataaaagtgtgtCACTTTCTCTTTAAATGCTTCACTGCTGGTTGAGCCAAAGTGCGACAGTAATTCGATCCAGTCTCTGAAGACCCCCGAACCTTCAGCAGCACCTCTTGGCACGGCTCACCATCATGTCTGAAGACGACGGCTCAGGAGGCGGTGACCTGTGCTCGGTGGATTTTGAGATATTCGGGGATGTTCAGGgTGTGTGTTTCCGTATGtacACAGAGAGACAAGGCCTCAGTCTGGGTCTGGTTGGCTGGGTGAAGAACACCAGTAAGGGGACAGTGGTGGGACAGGTGCAGGGACCCCGTCACCAGGTCAACGAGATGAAGGTGTGGCTGAGTAAAGAGGGGAGTCCCTTCTGTCGCATCGCCCGAGCTGTATTCAAAAACGAGAAGGACATCCCTAAAGTAGAGCTTTCTGGCTTCTCTACTCGATTCTGATGGACATTCTTCAGTTTTACAGCTAAACCCACTTTTAACCACACTGTATAAACCCATGATTACCAATCCCACCACAGATGGCTCTCTGTTTCTGGAGCTAAATCATTTTTAGAGCATCCAAACTGAATATGAACAGTTAATGACTGTTTTCTGGTGTATTTGTAGATTCTACTCTATATTTAGAGCATACAAAGCttatcttttatatatttaataatatatggcCCATTTCTGATCCATTTCCCAAAGGATAAAAAACTATCCAACCCAAtcttactgttactggaactcactcctgtttctAGCagtcattcctgttactttttatgttatgagtaacaggactgaaagtaacaggaatgagtttttagcatagcaTTCGCAAAAACATGAagaatagctaaatggcggctaatatgctaacagcatgaggacactgagcacattctagtgattttttcccccaaaatttgtatttaaacaataaaccaataagatgtaagaatgaatttaggtaacaggactgagtgttgagattgagctcctcagtcattacagttacaataagatcaaatatacagaaaaaactaatgagggaacttaattttggtcttcctaTGATTTTCCTTagaaccagctgatgatgtcacttcctgttgtagatgtcacttcctgttgtagaatgttccaggtgtttcagatgatcagggtaatgtgttacggtaacaggactgagtgaaaccaaaacacagggacacaactaaaatgtgtgttttaacttaaatattatggatttattatgaaaatatttttaaagcatagacaggatttggagtcacacaacaatacaaaaaaatacatttctaaaggattttaataattatattttcatggtaaagtttatagtttatagagaGTGGGGGATTGGAGtaataaatgctattttttcagtgttttaagtcgttttttattattgtctttTAGGTCAATGCACAAGACActgctttaataataaaatgtattttaacgtTATTttatgtgcacatttatacatgttatTTCCTGGTGGACAGAAATGGCATCaattcagtggaatggcccatatactgtatatcctcACTAAAGTGATTATTATAGGATGTATAATGCTACTATGTGAAGACATGGTAGTAAGgatgtgatgatgataataataaatt
>XM_022682091.1
AGCCAAAGTGCGACAGTAATTCGATCCAGTCTCTGAAGACCCCCGAACCTTCAGCAGCACCTCTTGGCACGGCTCACCATCATGTCTGAAGACGACGGCTCAGGAGGCGGTGACCTGTGCTCGGTGGATTTTGAGATATTCGGGGATGTTCAGGgTGTGTGTTTCCGTATGtacACAGAGAGACAAGGCCTCAGTCTGGGTCTGGTTGGCTGGGTGAAGAACACCAGTAAGGGGACAGTGGTGGGACAGGTGCAGGGACCCCGTCACCAGGTCAACGAGATGAAGGTGTGGCTGAGTAAAGAGGGGAGTCCCTTCTGTCGCATCGCCCGAGCTGTATTCAAAAACGAGAAGGACATCCCTAAAGTAGAGCTTTCTGGCTTCTCTACTCGATTCTGATGGACATTCTTCAGTTTTACAGCTAAACCCACTTTTAACCACACTGTATAAACCCATGATTACCAATCCCACCACAGATGGCTCTCTGTTTCTGGAGCTAAATCATTTTTAGAGCATCCAAACTGAATATGAACAGTTAATGACTGTTTTCTGGTGTATTTGTAGATTCTACTCTATATTTAGAGCATACAAAGCttatcttttatatatttaataatatatggcCCATTTCTGATCCATTTCCCAAAGGATAAAAAACTATCCAACCCAAtcttactgttactggaactcactcctgtttctAGCagtcattcctgttactttttatgttatgagtaacaggactgaaagtaacaggaatgagtttttagcatagcaTTCGCAAAAACATGAagaatagctaaatggcggctaatatgctaacagcatgaggacactgagcacattctagtgattttttcccccaaaatttgtatttaaacaataaaccaataagatgtaagaatgaatttaggtaacaggactgagtgttgagattgagctcctcagtcattacagttacaataagatcaaa

Function

NR:

description
PREDICTED: acylphosphatase-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251936 True 1751 TUCP 0.37 4 20117426 20127092
XM_022682091.1 False 970 mRNA 0.43 4 20118051 20126936

Neighbor

gene id symbol gene type direction distance location
LOC103033421 sptbn1,LOC108414519,LOC108260989,LOC105890945 coding downstream 9411 20022419 ~ 20108015 (-)
LOC103042714 eml5,eml6,LOC106608004 coding downstream 97389 19953122 ~ 20020037 (-)
LOC103034392 LOC108443823 coding downstream 176775 19922343 ~ 19940651 (-)
LOC103035966 NA coding downstream 742595 19371061 ~ 19374831 (-)
adgrb3 adgrb3,LOC107665593,LOC107736840,LOC107664175 coding downstream 844554 18950515 ~ 19272872 (-)
slc30a6 slc30a6,znt6 coding upstream 53821 20180913 ~ 20214951 (-)
LOC103041484 LOC108443830 coding upstream 117216 20244308 ~ 20269233 (-)
LOC107197720 NA coding upstream 145136 20272228 ~ 20281572 (-)
LOC111195146 NA coding upstream 155750 20282842 ~ 20287322 (-)
ddx21 ddx21,LOC108414772,LOC100194728,LOC107693788 coding upstream 173884 20300976 ~ 20319312 (-)
G185892 NA non-coding downstream 121173 19969909 ~ 19996253 (-)
G185687 NA non-coding downstream 203256 19913912 ~ 19914170 (-)
G185671 NA non-coding downstream 345879 19771323 ~ 19771547 (-)
G185654 NA non-coding downstream 549230 19566162 ~ 19568196 (-)
G185635 NA non-coding downstream 704440 19404985 ~ 19412986 (-)
G185934 NA non-coding upstream 225798 20352890 ~ 20378945 (-)
G185967 NA non-coding upstream 527513 20654605 ~ 20656786 (-)
G185974 NA non-coding upstream 572560 20699652 ~ 20701062 (-)
G185985 NA non-coding upstream 611598 20738690 ~ 20739699 (-)
G185986 NA non-coding upstream 611790 20738882 ~ 20739874 (-)
G185890 LOC108443824 other downstream 165630 19948082 ~ 19951796 (-)
apela NA other downstream 2019735 18023122 ~ 18097691 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other downstream 2067057 18018722 ~ 18050369 (-)
G185321 NA other downstream 2785472 17330018 ~ 17331954 (-)
nutm1 NA other downstream 2788537 17313370 ~ 17328889 (-)
G185943 NA other upstream 444097 20571189 ~ 20627262 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other upstream 513246 20640338 ~ 20678614 (-)
G185990 NA other upstream 621072 20748164 ~ 20752273 (-)
LOC103038058 slit1 other upstream 637036 20764128 ~ 20916624 (-)

Expression


Co-expression Network