G185943


Basic Information

Item Value
gene id G185943
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 20571189 ~ 20627262 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252009
AGTGGAGTGAGCACAGGTGAGAGTTCAGGTGAGAGTTCAGGTGTGTTGCTCAGGTGTGTTGCTCAGGTGTGGAGCAGGGCGTGAGGAGGACAGATGGCAGGTGAGGTGAGAGCTGGAGGGCAGGGTGAAGCCGGAGCCTCGGGGGAGAGCAGGCCAAGCATCACACAGCGTCCGGGAGTTCTGAGGAGAGTGACTGTAAGCCCCTTTCACAGCAGATACAAGGCTCTGCTTTCCTCCTCCTCAGGATCCGGTTCTTCTCCAGCAGCTGGTTTTAAACAGGAGAGTGACTTTCTCATCCACCTGTCTGATAAAACACCGCCCTCAGGAGACACGCCCACACAGaacGGGATTATCAGTAAAACCCTGAATTCCTTCAGCTTCACTCCTCCGAACAAAGCTAATGGACTCAATGGAAGCTCAACCACTGTGGACCCCTTTTCTCCTCAAGGCAaaGAGAACATGGCGGTGCCAAACGGTAGAGGAACCAATGGCTGGCCTTCAGCATCTTCTCCAGAAACACCATCCACACCAAATAACTGGGCGGTCTTCCCACCATCTCCTGCTTTAGATCAAGTCTCGGATCCATTCCAAGCCACGCCCCCTTCCTGGCTTTCAGACGCCCCTAAGAGTTGGTCAACCAATCACACCAAGGATATTTTACAACCTTCCAAAGCCAATGAGGAAAATGGCATCTCCAGGAGCATGGTGTCCAATGGGGTGCAAGCTGCATCTACCAGTTATTCATCAGATCCATTCCAAGCCACGCCTCCATCCTGGCTTTCGGACGTCCCCAAGATTGGTCCATCCAATCAGACCACTGATATTTTCCAATCTTCCAAAGCCAATGAGCAAAATGGCCGC
>TU252016
AGGAGAGTGACTTTCTCATCCACCTGTCTGATAAAACACCGCCCTCAGGAGACACGCCCACACAGaacGGGATTATCAGTAAAACCCTGAATTCCTTCAGCTTCACTCCTCCGAACAAAGCTAATGGACTCAATGGAAGCTCAACCACTGTGGACCCCTTTTCTCCTCAAGGCAaaGAGAACATGGCGGTGCCAAACGGTAGAGGAACCAATGGCTGGCCTTCAGCATCTTCTCCAGAAACACCATCCACACCAAATAACTGGGCGGTCTTCCCACCATCTCCTGCTTTAGATCAAGTCTCGGATCCATTCCAAGCCACGCCCCCTTCCTGGCTTTCAGACGCCCCTAAGAGTTGGTCAACCAATCACACCAAGGATATTTTACAACCTTCCAAAGCCAATGAGGAAAATGGCATCTCCAGGAGCATGGTGTCCAATGGGGTGCAAGCTGCATCTACCAGTTATTCATCAGATCCATTCCAAGCCACGCCTCCATCCTGGCTTTCGGACGTCCCCAAGATTGGTCCATCCAATCAGACCACTGATATTTTCCAATCTTCCAAAGCCAATGAGCAAAATGGCCGC
>TU252020
CCTCTTTGTTTTAGTGTTCTGATGGAAGTTCACAGTTTAAAGTTTGTTCTTGTCTGGTTCTGTGGGGCTTCTGGGAGATTGAATCAAATGAACCAAATGATTCAGAAAAAGAGTCGAGCCTGTGAGACGTTtgaatcatcatcatcatcatcgcaGTGAATCTGAGCATCACACAGCGTCCGGGAGTTCTGAGGAGAGTGACTGTAAGCCCCTTTCACAGCAGATACAAGGCTCTGCTTTCCTCCTCCTCAGGATCCGGTTCTTCTCCAGCAGCTGGTTTTAAACAGGAGAGTGACTTTCTCATCCACCTGTCTGATAAAACACCGCCCTCAGGAGACACGCCCACACAGaacGGGATTATCAGTAAAACCCTGAATTCCTTCAGCTTCACTCCTCCGAACAAAGCTAATGGACTCAATGGAAGCTCAACCACTGTGGACCCCTTTTCTCCTCAAGGCAaaGAGAACATGGCGGTGCCAAACGGTAGAGGAACCAATGGCTGGCCTTCAGCATCTTCTCCAGAAACACCATCCACACCAAATAACTGGGCGGTCTTCCCACCATCTCCTGCTTTAGATCAAGTCTCGGATCCATTCCAAGCCACGCCCCCTTCCTGGCTTTCAGACGCCCCTAAGAGTTGGTCAACCAATCACACCAAGGATATTTTACAACCTTCCAAAGCCAATGAGGAAAATGGCATCTCCAGGAGCATGGTGTCCAATGGGGTGCAAGCTGCATCTACCAGTTATTCATCAGATCCATTCCAAGCCACGCCTCCATCCTGGCTTTCGGACGTCCCCAAGATTGGTCCATCCAATCAGACCACTGATATTTTCCAATCTTCCAAAGCCAATGAGCAAAATGGCCGC

Function

GO: NA

KEGG:

id description
ko04712 Circadian rhythm - plant

RNA

RNA id representative length rna type GC content exon number start site end site
TU252009 False 861 TUCP 0.53 8 20571189 20575951
TU252016 False 584 TUCP 0.50 4 20571189 20572918
TU252020 True 869 TUCP 0.49 7 20571189 20627262

Neighbor

gene id symbol gene type direction distance location
LOC103029107 NA coding downstream 1074 20551797 ~ 20570115 (-)
LOC103039622 LOC105906630 coding downstream 22453 20532218 ~ 20548736 (-)
LOC103039929 NA coding downstream 48323 20514570 ~ 20522866 (-)
LOC103030053 NA coding downstream 58908 20500934 ~ 20512281 (-)
LOC103040253 ick,LOC108261001 coding downstream 71622 20485706 ~ 20499567 (-)
LOC103038689 zgc:55733,LOC108260929,LOC107751522,LOC107566606,LOC107702784 coding upstream 64667 20691929 ~ 20707650 (-)
LOC107197722 NA coding upstream 82574 20709836 ~ 20718681 (-)
LOC103027406 NA coding upstream 126676 20753938 ~ 20758729 (-)
arhgap19 arhgap19 coding upstream 305268 20932530 ~ 20940432 (-)
LOC111195255 LOC107558209 coding upstream 409619 21036881 ~ 21052668 (-)
G185934 NA non-coding downstream 192244 20352890 ~ 20378945 (-)
G185892 NA non-coding downstream 574936 19969909 ~ 19996253 (-)
G185687 NA non-coding downstream 657019 19913912 ~ 19914170 (-)
G185671 NA non-coding downstream 799642 19771323 ~ 19771547 (-)
G185654 NA non-coding downstream 1002993 19566162 ~ 19568196 (-)
G185967 NA non-coding upstream 27343 20654605 ~ 20656786 (-)
G185974 NA non-coding upstream 72390 20699652 ~ 20701062 (-)
G185985 NA non-coding upstream 111428 20738690 ~ 20739699 (-)
G185986 NA non-coding upstream 111620 20738882 ~ 20739874 (-)
G185989 LOC108437859 non-coding upstream 114387 20741649 ~ 20744673 (-)
LOC111195252 LOC108260666,LOC108412153 other downstream 444097 20117426 ~ 20127092 (-)
G185890 LOC108443824 other downstream 619393 19948082 ~ 19951796 (-)
apela NA other downstream 2473498 18023122 ~ 18097691 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other downstream 2520820 18018722 ~ 18050369 (-)
G185321 NA other downstream 3239235 17330018 ~ 17331954 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other upstream 13076 20640338 ~ 20678614 (-)
G185990 NA other upstream 120902 20748164 ~ 20752273 (-)
LOC103038058 slit1 other upstream 136866 20764128 ~ 20916624 (-)

Expression


Co-expression Network