G185976


Basic Information

Item Value
gene id G185976
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 20919092 ~ 20926640 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252069
GGTGGAGCTACACTCAAGGTCATATAAGGTTTTAACTGAcctctgtttatatttttaactcaattaagactctttttttttagctcatttAAGCTTTTTTCAGCACCAGCTTCAAATTTCATCCACTTTTTAATCTGTAAAGCTTGTTTTAGTGCTGAGGGAATGAAGATGCTGAGGCCTCACCTGTACCAACAGAACAGCCATGATCCATCAAGGTGTgaactccacaagacctctgaacCTTCTGCTGTATCTTCTGGAACATCACTACCAAGTCATGGGATCACAGGGGCAGCAGTGCAGAAGAGAATGCAGAATTCGCTCATCCAGTGTCCAggtttgtctctgttttttttaacccataCAGTTTACATCCCATATAAAACCAGTTCCACCCCTCACTCAAACCACCATTCATCCCATACAGAAATATGATCTATATCacatagtaaaatatatatataattcatatataacatttataaatcaACAAAGGTTgtatccccccaaaaaaacggAGGTTGAAGAAATCTCCTAGACACGCAGTGGAAGTCAGCGtgaagatttattttaagtcgttttgcagaattttttttggtcataaatTAAAGAAGTTTTCAAAAGTGCACTCATCCACTAAACTTATCCCTAAATTAATCGCAAAAACGATCTGCAAATTTGTCCCTAAACTAATCTGCAAATTTATGCCCAAACTCATCCTCCAACTCTACCCCAAGTTGATCCCCAAACTCATCCCTAAATTCATCCCCAAAACAAACGGCAAAAATTATCCCACAAATCACCCAAActctcccaaactcatcccagaTACAACTCACCAGAACTCTTCCCCAAACCCATCCCCGGAACTCTTCTCCAGATTCATTCCCAAACACATCCCCAGACTCATCTCTGAACCCATCCCAAAATCATCCCCAAACTCTTCTCTAGACTAATCCCAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATcacaaactcatccccaaactcTTCTCTAGACTAATCCCAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAAACTCATCCCCAGACCCATcacaaactcatccccaaactcTTCTCTAGACTAATCCCAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAAACACATCCCCAGACCCATCACAACacatccccagaccatcacaaaCACATCCCCAGACCCATCACAAACACATCCCCAGACCCATcacaaactcatccccaaactcTTCTCTAGACTAATCCCAAACacatccccagaccatcacaaaCACATCCCCAGACCCATCACAAACTCATCCCCAGACCCATcacaaactcatccccaaactcttctcttctcatcccAAACACATCCCCAAACCCATcacaaactcatccccaaactcTTCCCCATACTCATCACCTGAACCCTGTAGTTGTGTTGGTGTTGTTGGGTCTCTGGCTGGTCGTGGGGTTGTTGGCTGGTTGGAGGTGAGGAATGGTGAGGAATGGTGTGGGGTATGATTATACGCTGTTTTGGTTATTGAGTTCTTGGCGTTGGAGCGCCGCGCTGCACAGCGTCCGTCTCTCAGACACCCAGAAGAGCCGGTTTTCCCTCAGCGAGGCTAAATCTGGATTCTGCAGGATCTCAGTTCAGAGTGTCGGAGTCCGGAGAGCGGTGAGGACGGTTTCTGGTTGGTGTTTTTCCTCCGTCTGCCTGAACTTCCTCTGATTCTTTAGCCTCCTGGTCTGACAGCTTCTTAAACCTCACACTTACTGAACACTGCCCTCAGTCGTCACTCAGCAAGGGGCTAAAATCTGCTGATTCTGCTGGTTCTTTGGGTTAAAGCACCAAAAATAGTCATTCGTTTTTACACCATCAAATTTTAaccttttattattagttattaattagcattgagctgtggatctgtgttctctggaatgatggggcTCATACTTTTTTAGAAGAGGTGGAGAGGAGAAACATTGCAACAACCTAGCAATTAGTTCgcaacaccacagtaaccaccctggataccacagcaactactgAGCAACTGCTcagcaaccactcagcaacgCCACAGTAACCATCTtggacaccacagcaactgctCAGCAACGCCTCAGCAACCACCtcggataccacagcaactaaaCTACACAGCAGCTGCTTAGCAATCACTCagcaacaccacaacaaccaccatTGATGCTACAGCAGCTAAACTACtcagcaactgcttagcaaccactcagcaacaccaccAGCAACTCTGTTCCTTAACACAGACTGTCCACCCTGCATGGTGATCGTGGAgatcatatataataatatataatgcaaCAATGAAATAGCAAAACCTTAAAGCAAAGCAACCACCTTGGGTAACACAGGAACCACCTAGCTGGGACGTAAAGCTTTTGCAGCTTTAAACAGTGCTGTATATGCAAATCAGCTGTTTTGGCTATTCTGcatttaacttttaacttaTCTGTACCCTGAATATAGTTGATGTCCTGCAAAAAGCGTTGATATAATATGAAACTCCGTAATGTGAATCtgacaatttattttttcatattgtatttattgattggaccagttttttttttttaacattgatttttttttattgaaggtTAAGAAGATTTAAGACATTACAACTGCAggaatgttaaaaatgaatgtttttgctgtttagcTGTAAAGCTAAATGAATGCAGCATGTTTGCGCGCTACATTACACAGTTATTTTCACGTCTGAATGGATTTTTGATGATATGAGCTCTGTAACGCTGGTGTTTTACACTGGTGCACTGGGAATAGCTGTGGTGATGGTGTATATATAGCGTAACCGTGGTCGGGAGGGTACGATGTGTTAGCCGCAGTCGCATGCTTTACTGCGCTGCCAGATGATTGGCTCTGTAGGAATGCGTTTAGTGGAGGGAaactgcagcactgcagtggGGTTTTGGATTTTTGGCCCTGGGGGGGCCTCAGGCTGGTCTCAGATGACCTTCTGATACGGACTGGACTTTACTGTCTAATTTCAGGACTTAAACTGAGCGGTTTGGAGGTTTATCTGGTGATTAATGGTCGTGTTAAGAACCTGGTTACAGTAGAAATGTGAAGTATGTGGctgtaattgtgtaattgtgtggtTAGTGATTCTACACTGAATTagtaaattattttatcattcCTTCACTATCTTTCATGCTTTATCTTATttactgacctgtgggatacgTGGAATACATAGCTACAACCTCGCGACAATCTTAACCATCACCTGgtacaccataacaaccacctagcaactgcttagcagcCACTTAGTAACACTATTGCAACCAGCTTGCAACTACTTATCCACAACATAGCAATCCCCTGGGAGTCCACTGCAAAGCCATACAATCACATAGCAACAACTTATTGAAACCATAACAACCatctggaataccatagcaactacctagcaactgcttagcagcCACTTAGTAACACAATGGCAACAACCAAGGTACAGTTTACTGAAACCATAAGAACTACATAGAATACCACACCAACACCATGGCAACTGCCTTGCAACAACCTACCAAAATGAAAGCAATCAcctgagataccacagcaacctcctAACAGTTGCACCTAGAAGCTACTTAACATCATCTCATGAgctaccatagcaacatcataAAACCAcataacaccatagcaaccacatagcaacaacTTACAAGCAATTACATAACAATCACAAAGTAGGCCACAAAGCATCACCATAGCTACCACTGAGCTACAACGTACCgaaaacacaacaaacacctGGAAACTGCTTCGCGGCCATATACCAATCTGCTTGTAGTCCACGTAGCAATACCATACAACCACGTAGCAACAAGTTAACAAAACCATAACGACCACCTGGCAACTGCTTAGCAGCCACATAGCAATCCCCTGGGAgtccacatagcaacaccttcaACCACGTAGCAACACTGtagctaccacctagcaacaacttacaATAACGACCACCTGGCGACTGCTTAGCAGCCACTtagatggttgctaaagtgttactATCAACAGCTTACCAGAACCATTGCTACCACCtaaaacaccatagcaacaccgtACAACCAGTAAGGTTCTTTCTGCTCGGTAATGTTTACAGTGGGATCTGAAAGGATCTAGCTGCTCAGTTCCTCtgattaatgtgtgtttttctttttgtcttttgttaatTTTACATCTTTTTGTTTCGACACGGACGGATCGGTCGTTTCCGTGTTGTGGACGGGGGTCAGGCGCGTTCGGGCCGTTCGTTTAGGATTTTATAGCTGTTTTCTCTTTGGTAGAGCCGCGCCGGCGGCTTCGTGTTTGATTATTTGAACAGTGCGTTATATctggtgtatttttttcctctggATCGTCTCTGAGGCGACACTATTTAACTGCAGAAAAAGCTGTTACTGAAGTATTAGAGCACCATTAcgctttaaaacacaaaataaacgcTTCCATTAGAGCCATAAAACTGCAATCTTTCAACTGCTGGCTCATTTACTTCCAGCGTCTCAGGTCACCACTGTGTTCTCGCTGCCAGACAACTGATATGATACTTCTGAGGCTTTCCGAGGCTCTGTTTTCCTCTGAGACTCTatcgctctatctctctttttctctatttctctttttgtccttttctctttttgtctatAAGTTTTTACCACACATTTTTCACACATTCTCCATACCTGCTCTGTAGCCACCAGACTCGTATAGCGTATAGTCACTCGATTAAAGAGCACGTacgtttatttaatatttaccatttaaaatatctttaatacctaattttaaacatttttaggaGACATCTATTACCAACACCACCACACCTTCTCTATCGTAAACCTGTTAggtcttatttctatttcttattttcaacattttatggTGGCATTTCATGAAAAAGTGCACACATTGAACTTTCACTCCAAATTCTTTAACTCCTTTACGTTAATTATTCAAATTGCTAACTAAAGTGTATATTCTAGTTGCTGTATCGTTTAGATACATGGTAGATTTTACCACCATATAAAGCCATTCATCTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252069 True 5368 lncRNA 0.43 3 20919092 20926640

Neighbor

gene id symbol gene type direction distance location
LOC103027406 NA coding downstream 160363 20753938 ~ 20758729 (-)
LOC107197722 NA coding downstream 200411 20709836 ~ 20718681 (-)
LOC103038689 zgc:55733,LOC108260929,LOC107751522,LOC107566606,LOC107702784 coding downstream 211442 20691929 ~ 20707650 (-)
LOC103029107 NA coding downstream 348977 20551797 ~ 20570115 (-)
LOC103039622 LOC105906630 coding downstream 370356 20532218 ~ 20548736 (-)
arhgap19 arhgap19 coding upstream 5890 20932530 ~ 20940432 (-)
LOC111195255 LOC107558209 coding upstream 110241 21036881 ~ 21052668 (-)
LOC103026251 NA coding upstream 132544 21059184 ~ 21108034 (-)
kcnip2 kcnip2,LOC101469196,LOC106526488,LOC105900836,LOC106576844 coding upstream 210122 21136762 ~ 21273827 (-)
LOC103027134 tp53bp2 coding upstream 422919 21349559 ~ 21392008 (-)
G185989 LOC108437859 non-coding downstream 174419 20741649 ~ 20744673 (-)
G185986 NA non-coding downstream 179218 20738882 ~ 20739874 (-)
G185985 NA non-coding downstream 179393 20738690 ~ 20739699 (-)
G185974 NA non-coding downstream 218030 20699652 ~ 20701062 (-)
G185967 NA non-coding downstream 262306 20654605 ~ 20656786 (-)
G186026 NA non-coding upstream 179427 21106067 ~ 21106285 (-)
G186022 NA non-coding upstream 187522 21114162 ~ 21118432 (-)
G186031 NA non-coding upstream 199579 21126219 ~ 21130177 (-)
G186096 NA non-coding upstream 419720 21346360 ~ 21348271 (-)
G186110 NA non-coding upstream 468379 21395019 ~ 21395732 (-)
LOC103038058 slit1 other downstream 2468 20764128 ~ 20916624 (-)
G185990 NA other downstream 166819 20748164 ~ 20752273 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other downstream 240478 20640338 ~ 20678614 (-)
G185943 NA other downstream 291830 20571189 ~ 20627262 (-)
LOC111195252 LOC108260666,LOC108412153 other downstream 792000 20117426 ~ 20127092 (-)

Expression


Co-expression Network