G186022


Basic Information

Item Value
gene id G186022
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 21114162 ~ 21118432 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252141
TTAAACCCGCGGGAGAGGTTCTGTTAGCGGGTTCTGTTACCGGGTTCTGCAGCGCGGTTCTCCCCGTGGTCCTGTAGCCGCTGCACACCGCGTGCCGGAGGTTCGGGAGCAGCATGGTTCCGTCCTGTagatccaaacacacacaggaccTCCGCTTCCTCACACCGGCACCATGTTGTTTGAATCATTTGagTAGGGGAGCAGGATTTGGCGGGGGTATCAGATCTCGGCAGAGCCCCGGGCTGGCGGGTTATAAACAGAGCTGAACTACAGGCTGAATGTGACCCAAAAACACGgttttaagGATGTCTGAAGGCTTCCAGATGGAGGTATGTGTGGATTCAGTTGAGTCAGCGATAAACGCAGAAAGGGGAGgaGCTGGACGAATCGAGCTCTGCTCCAGCTTACTGGAAGGAGGAATCACACCCAGCATCGGTGAGtttcctttatttaatgtattttctatattataGATTAATGTTAAGTAATGATTAACTGAAATTCAGACAGCGGTAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGTAGTGGCCGATGCCCATATTCAGACAGCGGTAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGAT
>TU252142
cgctgctttttattgtatttttatgtttaaatatagagTAGGGGAGCAGGATTTGGCGGGGGTATCAGATCTCGGCAGAGCCCCGGGCTGGCGGGTTATAAACAGAGCTGAACTACAGGCTGAATGTGACCCAAAAACACGgttttaagGATGTCTGAAGGCTTCCAGATGGAGGTATGTGTGGATTCAGTTGAGTCAGCGATAAACGCAGAAAGGGGAGgaGCTGGACGAATCGAGCTCTGCTCCAGCTTACTGGAAGGAGGAATCACACCCAGCATCGGTGAGtttcctttatttaatgtattttctatattataGATTAATGTTAAGTAATGATTAACTGAAATTCAGACAGCGGTAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGTAGTGGCCGATGCCCATATTCAGACAGCGGTAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGAT
>TU252143
TTAAACCCGCGGGAGAGGTTCTGTTAGCGGGTTCTGTTACCGGGTTCTGCAGCGCGGTTCTCCCCGTGGTCCTGTAGCCGCTGCACACCGCGTGCCGGAGGTTCGGGAGCAGCATGGTTCCGTCCTGTagatccaaacacacacaggaccTCCGCTTCCTCACACCGGCACCATGTTGTTTGAATCATTTGGATGTCTGAAGGCTTCCAGATGGAGGTATGTGTGGATTCAGTTGAGTCAGCGATAAACGCAGAAAGGGGAGgaGCTGGACGAATCGAGCTCTGCTCCAGCTTACTGGAAGGAGGAATCACACCCAGCATCGGTGAGtttcctttatttaatgtattttctatattataGATTAATGTTAAGTAATGATTAACTGAAATTCAGACAGCGGTAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGATGCCCATATTCAGACAGCGGTAGTGGCCGATGCCCATATTCAGACAGCGGTAGTGGCCGATGCCCATATTCAGACAGCGGCAGTGGCCGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252141 True 734 lncRNA 0.53 4 21114162 21118432
TU252142 False 579 lncRNA 0.50 3 21114162 21116832
TU252143 False 621 lncRNA 0.53 3 21114162 21118432

Neighbor

gene id symbol gene type direction distance location
LOC103026251 NA coding downstream 6128 21059184 ~ 21108034 (-)
LOC111195255 LOC107558209 coding downstream 61494 21036881 ~ 21052668 (-)
arhgap19 arhgap19 coding downstream 173730 20932530 ~ 20940432 (-)
LOC103027406 NA coding downstream 355433 20753938 ~ 20758729 (-)
LOC107197722 NA coding downstream 395481 20709836 ~ 20718681 (-)
kcnip2 kcnip2,LOC101469196,LOC106526488,LOC105900836,LOC106576844 coding upstream 18330 21136762 ~ 21273827 (-)
LOC103027134 tp53bp2 coding upstream 231127 21349559 ~ 21392008 (-)
LOC103024822 NA coding upstream 411029 21529461 ~ 21532413 (-)
LOC103024095 lgi3,lgi1a,LOC108260544,LOC107701579,LOC107565913,LOC107753733 coding upstream 483584 21602016 ~ 21618998 (-)
ffar4 NA coding upstream 506008 21624440 ~ 21628770 (-)
G186026 NA non-coding downstream 7877 21106067 ~ 21106285 (-)
G185976 NA non-coding downstream 187522 20919092 ~ 20926640 (-)
G185989 LOC108437859 non-coding downstream 369489 20741649 ~ 20744673 (-)
G185986 NA non-coding downstream 374288 20738882 ~ 20739874 (-)
G185985 NA non-coding downstream 374463 20738690 ~ 20739699 (-)
G186031 NA non-coding upstream 7787 21126219 ~ 21130177 (-)
G186096 NA non-coding upstream 227928 21346360 ~ 21348271 (-)
G186110 NA non-coding upstream 276587 21395019 ~ 21395732 (-)
G186136 NA non-coding upstream 318375 21436807 ~ 21445436 (-)
G186175 NA non-coding upstream 370461 21488893 ~ 21489095 (-)
LOC103038058 slit1 other downstream 197538 20764128 ~ 20916624 (-)
G185990 NA other downstream 361889 20748164 ~ 20752273 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other downstream 435548 20640338 ~ 20678614 (-)
G185943 NA other downstream 486900 20571189 ~ 20627262 (-)
LOC111195252 LOC108260666,LOC108412153 other downstream 987070 20117426 ~ 20127092 (-)

Expression


Co-expression Network