G186096


Basic Information

Item Value
gene id G186096
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 21346360 ~ 21348271 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252239
ggagcgcggaggtgagctattcaacaaagtaaaagtactttttatcatgttttactacattaaaagtaaattttacaccggagttctcctttaagattaGGACAATCTTAAGAAGATCGCATCTTCATCGGTAACATCTTCAAGTGCATCACAATCCACACAATTTCTCCTTTTCTACTGCAGAATTTAACGATTGTTAAATTCAGagattaatcatatttttaagaattgaaACAGTTTTGCGAAGCAAAATATCGCAATCTGGTTcgatatatatcaatattttcttacgcTTTCTATTAAACGGTACGATGTGAACacttaaaactgtttatctCTGCAGTGGAAAAGAGGTATCTATGgacaaaagataaaaatgagAGTTTTAAAGCTGTAGTAATTggttaaaatgcttaaaattcaagcTCAGATCTTCCTACCAGAGCTTTTTGGTGGTGCTCCATCTAAAACTCAATCCTTAAGTCACGTATTTCCACTGTAGAGTTGATAATCGGCGCTGTGGTCTGCTGTTACCTTCGGTCAGTATTTGTTTGCCTGTAAATCACTGTTGTTAATAGTTCCTTTAATGCTGCAGATCAAAGAAACACCTGAACCAGTGGATCACCTGATTCAGGTGCGTCTCCTTCAACTTTACCAGCGTGGAGAACACCCAAGTTCATATCCTTTTACGTAAAGATGCTTTCCGTTTTAACTCAAATCTCAAGATTTTGAAATTTCGAGTAGGAAATGTCAACTGGAGTGCCCTAAAAGATTGCATTTCGTATTCGGAACACCTAAAACAAGATGCTCGCCAATCTAATATAGAGTTCAAAATTCAAAAATCCAATATGGCTGCTGCAGATATCAATAGTTTAGATGTTGGGGTCCATTTGAGCTCGAATGTCAAAATTTCCACGTTCTAAGTAGGAAATTTCAGCTGGAAAGCTCCTACAGATCGAAATTTCAGAGTTCTGAAATCCAATATGGCTGCCCCAACATCAAAAGTCTAATGCGTTCCAATTTACCAAATGGCTGCACATGATTATTTCAAATTCTGAGTTCCATTTTAACTTTAATGTTGGAAATTCCTAGCTTCAAATGGGAAATCTGAACCGGAACGCTCCTACAAGTAGGATTTTCTACTTGGAAAGTTGGAAAATAGAGAATTAAAAAGTCCAATATGGCTGCTGTGCAAATCATTAGTTTAAATGCTGTGTTCCATTTGTGATCAAATGTCGAAATTTCTAAGATCTAAGTAGGAAATCTCAGCTGGAAAGCTGTTTCTAAAAGCAGGATTCACCACCCCATTTGCACAtcaacagtaaaacagtaaaatcagtATTAATATAGAGTTTATCAGTTTTATCTATTAGTCTTTCATTAAATCAGTTGTAAAAACACTACTGTCCAACTTCTTTTTggatgattaaaataaaaacagagttATCTGAAAGCTCCACTTAATTTTCTGATATTTGACCTGTGAGGTAAATGAAACGCATTTTAAGAGTTGCTCTGTACGAaagtgttttgggtcattgatgatgaaagtgataaaaaaaaaaattaggtgaTACGATTTTTCTGAAATCCTTTTTCTCTTGTTTAAACATAATGACTGTTTTTAGCATATCTTCACATTTTCACGGtcagttattgtaatattcGCAGCGTCCGCCACATTGAAAGCAAGTTTTTCGCGTCTCTATGTTGTGATATGTAACGCCACTCAATCATAAACCCTTTTACACACTA
>TU252251
ggagcgcggaggtgagctattcaacaaagtaaaagtactttttatcatgttttactacattaaaagtaaattttaGTTTAGATGTTGGGGTCCATTTGAGCTCGAATGTCAAAATTTCCACGTTCTAAGTAGGAAATTTCAGCTGGAAAGCTCCTACAGATCGAAATTTCAGAGTTCTGAAATCCAATATGGCTGCCCCAACATCAAAAGTCTAATGCGTTCCAATTTACCAAATGGCTGCACATGATTATTTCAAATTCTGAGTTCCATTTTAACTTTAATGTTGGAAATTCCTAGCTTCAAATGGGAAATCTGAACCGGAACGCTCCTACAAGTAGGATTTTCTACTTGGAAACTTAGAAAAGAGAGGGTTACCaattctgaggtaaaaaaaattaaaaatccaaTATGGCTGCCACACACATCAGTAGTGAAATGCTGTGGTAAATCCTTCATCCAGGTATAAGATTTGACCTGGAACGCTCCTACAAGTTGGACTTTCTACTTGGAAAGTTGGAAAATAGAGAATTAAAAAGTCCAATATGGCTGCTGTGCAAATCATTAGTTTAAATGCTGTGTTCCATTTGTGATCAAATGTCGAAATTTCTAAGATCTAAGTAGGAAATCTCAGCTGGAAAGCTGTTTCTAAAAGCAGGATTCACCACCCCATTTGCACAtcaacagtaaaacagtaaaatcagtATTAATATAGAGTTTATCAGTTTTATCTATTAGTCTTTCATTAAATCAGTTGTAAAAACACTACTGTCCAACTTCTTTTTggatgattaaaataaaaacagagttATCTGAAAGCTCCACTTAATTTTCTGATATTTGACCTGTGAGGTAAATGAAACGCATTTTAAGAGTTGCTCTGTACGAaagtgttttgggtcattgatgatgaaagtgataaaaaaaaaaattaggtgaTACGATTTTTCTGAAATCCTTTTTCTCTTGTTTAAACATAATGACTGTTTTTAGCATATCTTCACATTTTCACGGtcagttattgtaatattcGCAGCGTCCGCCACATTGAAAGCAAGTTTTTCGCGTCTCTATGTTGTGATATGTAACGCCACTCAATCATAAACCCTTTTACACACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252239 True 1755 lncRNA 0.35 2 21346360 21348271
TU252251 False 1117 lncRNA 0.35 2 21346360 21348271

Neighbor

gene id symbol gene type direction distance location
kcnip2 kcnip2,LOC101469196,LOC106526488,LOC105900836,LOC106576844 coding downstream 72533 21136762 ~ 21273827 (-)
LOC103026251 NA coding downstream 238326 21059184 ~ 21108034 (-)
LOC111195255 LOC107558209 coding downstream 293692 21036881 ~ 21052668 (-)
arhgap19 arhgap19 coding downstream 405928 20932530 ~ 20940432 (-)
LOC103027406 NA coding downstream 587631 20753938 ~ 20758729 (-)
LOC103027134 tp53bp2 coding upstream 1288 21349559 ~ 21392008 (-)
LOC103024822 NA coding upstream 181190 21529461 ~ 21532413 (-)
LOC103024095 lgi3,lgi1a,LOC108260544,LOC107701579,LOC107565913,LOC107753733 coding upstream 253745 21602016 ~ 21618998 (-)
ffar4 NA coding upstream 276169 21624440 ~ 21628770 (-)
LOC111195258 NA coding upstream 281331 21629602 ~ 21636692 (-)
G186031 NA non-coding downstream 216183 21126219 ~ 21130177 (-)
G186022 NA non-coding downstream 227928 21114162 ~ 21118432 (-)
G186026 NA non-coding downstream 240075 21106067 ~ 21106285 (-)
G185976 NA non-coding downstream 419720 20919092 ~ 20926640 (-)
G185989 LOC108437859 non-coding downstream 601687 20741649 ~ 20744673 (-)
G186110 NA non-coding upstream 46748 21395019 ~ 21395732 (-)
G186136 NA non-coding upstream 88536 21436807 ~ 21445436 (-)
G186175 NA non-coding upstream 140622 21488893 ~ 21489095 (-)
G186180 NA non-coding upstream 164350 21512621 ~ 21517622 (-)
G186186 LOC108414040,LOC108271264,LOC107698240 non-coding upstream 205135 21553406 ~ 21577296 (-)
LOC103038058 slit1 other downstream 429736 20764128 ~ 20916624 (-)
G185990 NA other downstream 594087 20748164 ~ 20752273 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other downstream 667746 20640338 ~ 20678614 (-)
G185943 NA other downstream 719098 20571189 ~ 20627262 (-)
LOC111195252 LOC108260666,LOC108412153 other downstream 1219268 20117426 ~ 20127092 (-)

Expression


Co-expression Network