rps27a (rps27a)


Basic Information

Item Value
gene id rps27a
gene name rps27a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11429249 ~ 11431897 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230114.3
GCGCGGGGCTTCTGCTGATCCCTGCGATCTGGGCGAGAAAACCCCGTCGCGCCCTCCTCCAGCCCTCTTCTCATGATCCGCCATTAGCGAGAGGCTTGTGgTGGACTCGACGGCAAAATGCAGATTTTCGTCAAAACCCTTACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCAGATACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGgtaTCCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCTGATTACAACATCCAAAAGGAGTCCACCCTGCACCTGGTGCTGAGACTTCGTGGTGGTGctaagaagaggaagaagaagtcTTACACCACCCCCAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTCGCTGTGCTCAAGTACTATAAGGTCGATGAAAACGGCAAGATCCACCGTCTTCGTCGCGAGTGCCCCGCTGATGAGTGTGGTGCCGGTGTTTTCATGGCCAGCCACTTCGACAGGCACTATTGCGGAAAGTGCTGTCTGACTTACTGCTTCAACAAGCCAGAGGACAAGTAAATGTACAGTAGTCAATAAAATGTTCACCACCCAAC

Function

symbol description
rps27a Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS27A (ribosomal protein S27a).

NR:

description
Zgc:66168 protein, partial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02977 RP-S27Ae, RPS27A, UBA80; ubiquitin-small subunit ribosomal protein S27Ae

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230114.3 True 623 mRNA 0.52 6 11429249 11431897

Neighbor

gene id symbol gene type direction distance location
ston1 ston1 coding downstream 2746 11412610 ~ 11426503 (-)
mogs mogs,LOC106609973,LOC106602766 coding downstream 921854 10498845 ~ 10507395 (-)
LOC103029885 LOC108434384,LOC108435548,LOC107702154 coding downstream 950075 10474402 ~ 10479174 (-)
fbxo41 fbxo41,LOC108260496,LOC107689471 coding downstream 999841 10332167 ~ 10429408 (-)
smox smox,LOC107689473,LOC107551695,LOC107551688,LOC107692173 coding downstream 1209388 10197406 ~ 10219861 (-)
ccdc88a ccdc88a coding upstream 79283 11511180 ~ 11574143 (-)
ppp4r3b ppp4r3b,smek2 coding upstream 150941 11582838 ~ 11594672 (-)
pnpt1 pnpt1,LOC106607983 coding upstream 165381 11597278 ~ 11611851 (-)
cfap36 cfap36 coding upstream 181759 11613656 ~ 11627474 (-)
LOC103040758 LOC108427447 coding upstream 241196 11673093 ~ 12525320 (-)
G183884 NA non-coding downstream 82086 11346910 ~ 11347163 (-)
G183857 NA non-coding downstream 241707 10955599 ~ 11187542 (-)
LOC111195215 NA non-coding downstream 252065 11157282 ~ 11177184 (-)
G183854 NA non-coding downstream 584650 10844201 ~ 10844599 (-)
G183840 NA non-coding downstream 769915 10658997 ~ 10659334 (-)
G183960 NA non-coding upstream 35960 11467857 ~ 11468253 (-)
G183963 NA non-coding upstream 44739 11476636 ~ 11479389 (-)
LOC111195221 NA non-coding upstream 1096677 12528574 ~ 12633591 (-)
G184094 NA non-coding upstream 1250598 12682495 ~ 12682697 (-)
G184150 NA non-coding upstream 1360885 12792782 ~ 12794964 (-)
gtf2a1l NA other downstream 17605 11402707 ~ 11411644 (-)
G183880 NA other downstream 122428 11306289 ~ 11306821 (-)
G183585 NA other downstream 1576868 9845822 ~ 9852381 (-)
G183559 NA other downstream 1771635 9655313 ~ 9657614 (-)
LOC111195271 NA other downstream 3926820 7490075 ~ 7502429 (-)
G184051 NA other upstream 763315 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 1794436 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 2119235 13551132 ~ 13594753 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 2556912 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 2631747 14063644 ~ 14116456 (-)

Expression


Co-expression Network