rpl9 (rpl9,LOC107671920,LOC107700291,LOC107709470)


Basic Information

Item Value
gene id rpl9
gene name rpl9,LOC107671920,LOC107700291,LOC107709470
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15632254 ~ 15637092 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230218.3
AGTGGTGATGTCAGCACGTTGGCGCTACAATTGCGTCATGACGCCGCTCCTccttcctttcctcctctatcagCGAGAATGAAGACCATTCTCAGTACCCAGACGGTGGACATCCCCGACAAAGTTGATGTGAGCCTAAAAGGCCGCACCATCACTGTGAAGGGTCCTCGTGGAACTCTTCGCCGGGAGTTCAGCCACATTAACCTGGAGCTTCGTCTGCTCGGCAAGAAGCAGAAGAAGCTGCGTGTGGACAAATGGTGGGGTAACAGGAAGGAGCTGGCCACTGTCAGAACCATTTGCAGCCATGTTCAGAACATGATCAAGGGTGTGACCATGgGCTTCAGGTACAAGATGCGATCTGTGTATGCCCATTTCCCCATCAACGTGGTGATTCAGGAGAGTGGCTCACTGGTGGAGATCAGGAACTTCCTGGGAGAGAAGTACATTCGCCGTGTCCGCATGAGGCCAGGTGTGAACTGTGCGCTCTCAGCAGCCCAGAAAGACGAGCTTGTTCTGGAGGGTAACGATATTGAGCTGGTGTCAAACTCTGCTGCCCTCATCCAGCAGGCAACCTCAGTCAAAAATAAGGATATCAGAAAGTTCCTGGACGGTATCTATGTCTCTGAGAAGGGGACAGTAGTGGAGCCGGAGGCGTAGAGGACGCAAGCTGCCCTGATTCAGCAGGCCACCTCTGTCCGGAAGAAGGACATCCGGAAGTTCTTAGACGGTATTTATGTCAGCGAGAAGACTACTGTGGAGGAACAGCCAGATAATTAACATCACGTCCTTGTAAAATCtgtcaataaacatctattctTTTTCACCCACCA

Function

symbol description
rpl9 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL9 (ribosomal protein L9).

NR:

description
60S ribosomal protein L9

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02940 RP-L9e, RPL9; large subunit ribosomal protein L9e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230218.3 True 830 mRNA 0.52 8 15632254 15637092

Neighbor

gene id symbol gene type direction distance location
rfc1 rfc1,LOC102787736 coding downstream 2249 15616094 ~ 15630005 (-)
LOC103043828 LOC108437730 coding downstream 71422 15428393 ~ 15560832 (-)
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding downstream 259817 15367109 ~ 15372437 (-)
LOC103041667 ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407 coding downstream 279968 15332135 ~ 15352286 (-)
LOC103042179 NA coding downstream 328339 15265108 ~ 15303915 (-)
ugdh ugdh,LOC107757604 coding upstream 8046 15645138 ~ 15659566 (-)
pds5a pds5a,LOC107757607 coding upstream 47724 15684816 ~ 15707540 (-)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 coding upstream 126094 15763186 ~ 15767780 (-)
dctpp1 dctpp1 coding upstream 457938 16095030 ~ 16096320 (-)
fam160a1 fam160a1 coding upstream 482582 16119674 ~ 16141270 (-)
G184836 NA non-coding downstream 67371 15564622 ~ 15564883 (-)
LOC111195235 NA non-coding downstream 213047 15412667 ~ 15419207 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding downstream 245153 15384714 ~ 15387101 (-)
G184818 NA non-coding downstream 253048 15372772 ~ 15379206 (-)
LOC103043324 NA non-coding downstream 579384 15047747 ~ 15052870 (-)
G184853 NA non-coding upstream 23575 15660667 ~ 15664885 (-)
G184854 NA non-coding upstream 28086 15665178 ~ 15665714 (-)
G184863 NA non-coding upstream 84215 15721307 ~ 15722297 (-)
G184865 NA non-coding upstream 89272 15726364 ~ 15726622 (-)
G184868 NA non-coding upstream 95289 15732381 ~ 15732755 (-)
smim18 smim18 other downstream 251046 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 291674 15309509 ~ 15340580 (-)
LOC103032041 NA other downstream 1515798 14063644 ~ 14116456 (-)
smim14 smim14 other upstream 29019 15666111 ~ 15671954 (-)
lrat lrat other upstream 1261086 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1592993 17230085 ~ 17241027 (-)
G185295 NA other upstream 1615175 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 1658409 17295501 ~ 17300782 (-)

Expression


Co-expression Network