rfc1 (rfc1,LOC102787736)


Basic Information

Item Value
gene id rfc1
gene name rfc1,LOC102787736
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15616094 ~ 15630005 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230219.3
CATGCTCAAACCCTGCATCATCACGCAGCGCCCAAACTTGGCGCCAAAGGCGAGTGTTGTGAGTGTTGGTGCAGAAGTGCAGGAGAAAGAGGGGATTTTAGAGAAAGATGGACATCCGCAGGTTCTTTGTTCCAACAACGTCCAAATCAACAACAGGAAGCAGCAGCACTGAAGAGGAGCACAGAAAGAAATCTTCCTCCAAGatcTTAAGTCCTAAATCTGATGAGAAACGCACAGCAAAGCGGAAGAAGAGAGTAATCGCAGATTCAGactctgaggaggagaagaaaacaaagaagaatGTTAAAGAAAAGAGCACTGCATCTGGAAAGAAAGACCCTGTTGCTTTCGTGTCTGATTCAGATTCAGATGAAGCGTTTGAGTCGTTGAAGAAAATCTCCAAACCTAAAGAGAATGGAAATAACAGAGGTGGAAAAGACTTGACCTCCGGGAAATCGAAAGAAGTGAAATCAGCTGCAGTTAAATCACCTGTTAAACCCTCTGCTGCTCCTGGCTCTAAATCAGACATCAGGAACGCTCTCAGTCCGACTCCACCCAAACCAGCTGCACCCAAACACACCGCCACCTCTGCTGCAGATTTCTTTGGTAGCTCTTCAATCAACAGGTCGGGAAAGAAGCTGGTGGCGAGTGCCAGCACCAAGCGCAAAGCACCTGTCGAAGATCCAGAGCACAGTGATGAGGCCATCGCGAAGCAGCTACAGATGGACGAGGACATGGAGttggAGAAGCAGATCCATGATGATGAGGAGTTTGCTAGAACTCTGGCTATGCTGGAACAAGCCCCACTGCCCAAAAAGGCCCGTGTAGGCACAGTGTCCCCCTCTAAGAGCAGCCCACAGGCCACTGCTACTGACTCCAAAAAGCACACCTCCAAGAGCCCCTCGCCAAAAAAGAGCCCTGTAAAGGCCAGTTCCAAGCTGGCCCAGATGAAGAGGAGAgctgatgaagaggaggagcagaaaaacaagaaagaagagaggaaaagcAAAATGGTCTTCTCTCCCAAAAAAGAGCCCATCACACCCACCCGCTCAGAGATGGCAGCTACACCCAAAACAGAACAGGCTTCTGAAGGAGCGTCCAGATCTAAAAGCATCTCCACGCCCAAGAGTGCCGGCAGCACCAAAACCTCTCCCACGAAACCAGAGGTTAGTCCAGAAGGCTCGGAGAAGAAGCGGGTAAACTCAGCAGCGTTCAGAAACTACCTGAACAGAGATGGGCCTCGTGCTCTCGGGTCTAAAGAGATACCACAGgGTGCGGAGAACTGTCTGGAgggctgtgtgtttgtgctgacTGGAGTGTTGGAGTCTATGGAGCGAGACGATGCGAAGTCATTAATAGAGCGCTATGGTGGGAAAGTCACTGGAAATGTCAGTCGAAAAACCACGTATCTGGTGCTGGGCCGAGACAGTGGAGTTTCAAAGACTGAGAAGGCTCAGAGTTTTGGCACAAAGATCCTAAATGAAGATGAGCTGCTGGAACTGATCCGAACCAAACCTGGCAAGAAGTCTAAATACGAGATTGCTGCAGAGGCTGAGTGCAAAGCCACAAAGACGAAGAGTCCTTCACAAAAGCTCACGTCTCAAAGACCCAGTGGAACCAAGACCAGCCCGGCCAAAAGCAGCCCGTCTCCGAAAAAGACCCGGCCGGGCTCCGCCTCTACACCCGGACCCTCAGGGTCCTCCCGCAGAGACTCGGCACCAGAGGTGAAGAAGAGTCTGGAATTTGGTAAAGCCTCGCCCCCTGTGCCCCGCCCTGCTGGAGAGGAAAATGGAACAAGCTTGTTGTGGGTGGATAAGTACCGCCCTCGCAGTCTTAAGAATCTGATTGGGCAGCAGGGAGAGCAGAGCTGTGCCAATAAGCTGCTGAGGTGGCTTCAGAACTGGCACAAGCACCACAGCGGCAACACTAAACCCGCAGCGGCTCGGTTTGGTAAGTTCGGGGGAAAGGATGATGGTTCTGGGTTTAAGGCTGCTCTGTTGTCGGGACCACCTGGTGTGGGAAAGACCACCACTGCTGCCCTTGTTTGTGAGgAGGTGGGTTACAGTTACGTGGAGATGAATGCCAGCTGTACCCGCAGTAAGAACAGTCTGAAGGAAGTGATCGCAGAATCTCTCAACAACACGAGCATTAAAAACTTCTACACAGGTACATCTCAGACTGTGAGTAATAAACATGTTCTCATAATGGACGAGGTGGACGGCATGGCAGGAAATGAGGACAGAGGAGGAATTcagGAGATGATTGGTCTGATAAAGCAATCTAAGATCCCAATCATCTGCATGTGTAACGATCGCAACCATCAGAAGATCCGCTCACTGGCCAACTACTGCTTCGACCTGCGCTTCCAGCGTCCCCGAGTGGATCAGATAAAGGGTGCCATGATGTCAATTGCTTTTAAAGAAGGAGTGAAGATCCCGCCTCCAGCTCTGAACGAAATCATCCTGGCATCAAATCAGGATATTCGACAGGTTATGCATAATCTGTGTATGTGGTCAGCTACAGACAAAGTTATGACCTATGACCAGGCGAAAGCAGACGCCAGCAAAGCCAAGAAAGACATGAAACTGGGTCCGTTTGATGTGTGCAGGAAAGTGTTCGTCTCGGGAGAAGAAACCGCCCACATGACTTTGATTGATAAGTCGGATCTTTTCTTCCATGATTACTCGTTAGCGCCGCTGTTCGTTCAGGAGAATTACATACACGTACGACCGGCTGCAGCGGGAGGAAATCTGAAAAATCACCTGGTGTTACTGAGTAAAACAGCGGACAGCATCTGTGACGGAGATTTAGTGGACAGACAGATTCGCTCCCGACAGACCTGGTCTTTACTGCCCACACAGgCAATCTATGCCAGTGTGCTGCCGGGTGAGCTGATGCGGGGTTATATGAGCCAGTTTCCCACTTTTCCCAGCTGGCTGGGGAAGTTCTCGTCTACTGGTAAACACCACCGCATCATACAGGAGCTGGCCTCACACATGAGTCTGAAGACGTTGAGCAGTAAGGAGGCGGTGAATCTGGACTACCTGCCGTATCTGCGCACTGCTCTACTGGAGCCGCTGCAGTCACAGGGTTCAGAGGGAGCCAATAAGAGTGTGACGCTTATGGACGACTACGCCATCATCAAAGAGGATTTCGACAACATTATGGAGATCAGTAGCTGGGGCGGACAACCGGACCCCTACTCTAAACTCGACTCTAAGGTGAAAGCATCATTTACACGAGCATATAACAAAGAGACGCACCTGACCCCGTACTCACTGCAGACAGTAAAGAAAGGTCGCAAAGGGGCCGCAGACGTCGACCTCGCCTTAGATCCTGAGAATGACACCCAGGGccaggaagaggaagaggaggaggaagggcTTGACGCCATGATCAAGCAAAAGAAAGCTAAAGCCACAAAAGAGCCCAAAGagcccaaaaaagaaaaagccaaGGAGTCTGGAAAGGGGAAAGGAAGAGGAAAGGGCAAGAAGTGATGTTGAGACTGAActgaagagagaaagatgaataAGGAATGGACGGGCATTTCCTGCAGTAGTGCCCACTGATCTTAACCTGGCTAACTAACAGCTGGAAAAGTCTGTCTAAAAGTCAGAATTGTCGAGGTAAAAAGTGACACATGAGAAGCTTCCACAGATCTCCTGCTCTGGACAGCATTCAATAACGCGGATAAACTATACAAATCACTGGGACCACAAACACGAGGCGCACACATTTACTAATCAAACTTACAACAGTACAACAGTACTTTTACTGAGATCAAAATTACGTACCTTAAGACATATTCATTAATTTTTACAGTACGTAGATTTCCCAACAGctcacacagtttaaaaaaatataatataagcaCTTTCCACAACATGCACACTTCTTCTCTCGTGTGCTTCCTGAAGACCTTACCGTACCTTCCTGAAAGCACTGTAACTCAGTGCACTCGCGCTGTAAATGTACATGTGCAGTTTGTCAATAGTCTAGTATTATACTTAGGACTTTTGCAGATTGtggagaaaataataaaataaataaataaagttttgcTTTGGCTTTTGTATGAAGGCAGCATTGAGGACACACTGGCAGTGCTGCTTaccggcctgtagcctgtagcATTTACTGTATAAACTTGTGTTTTTCACCAAGCAATTAAAGAATAATCTTATAGTGA

Function

symbol description
rfc1 Predicted to enable ATP binding activity; DNA binding activity; and DNA clamp loader activity. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Human ortholog(s) of this gene implicated in West Nile fever. Orthologous to human RFC1 (replication factor C subunit 1).

NR:

description
PREDICTED: replication factor C subunit 1

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10754 RFC1; replication factor C subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230219.3 True 4195 mRNA 0.49 24 15616094 15630005

Neighbor

gene id symbol gene type direction distance location
LOC103043828 LOC108437730 coding downstream 55262 15428393 ~ 15560832 (-)
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding downstream 243657 15367109 ~ 15372437 (-)
LOC103041667 ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407 coding downstream 263808 15332135 ~ 15352286 (-)
LOC103042179 NA coding downstream 312179 15265108 ~ 15303915 (-)
LOC103043225 NA coding downstream 354576 15259377 ~ 15261518 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding upstream 2249 15632254 ~ 15637092 (-)
ugdh ugdh,LOC107757604 coding upstream 15133 15645138 ~ 15659566 (-)
pds5a pds5a,LOC107757607 coding upstream 54811 15684816 ~ 15707540 (-)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 coding upstream 133181 15763186 ~ 15767780 (-)
dctpp1 dctpp1 coding upstream 465025 16095030 ~ 16096320 (-)
G184836 NA non-coding downstream 51211 15564622 ~ 15564883 (-)
LOC111195235 NA non-coding downstream 196887 15412667 ~ 15419207 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding downstream 228993 15384714 ~ 15387101 (-)
G184818 NA non-coding downstream 236888 15372772 ~ 15379206 (-)
LOC103043324 NA non-coding downstream 563224 15047747 ~ 15052870 (-)
G184853 NA non-coding upstream 30662 15660667 ~ 15664885 (-)
G184854 NA non-coding upstream 35173 15665178 ~ 15665714 (-)
G184863 NA non-coding upstream 91302 15721307 ~ 15722297 (-)
G184865 NA non-coding upstream 96359 15726364 ~ 15726622 (-)
G184868 NA non-coding upstream 102376 15732381 ~ 15732755 (-)
smim18 smim18 other downstream 234886 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 275514 15309509 ~ 15340580 (-)
LOC103032041 NA other downstream 1499638 14063644 ~ 14116456 (-)
smim14 smim14 other upstream 36106 15666111 ~ 15671954 (-)
lrat lrat other upstream 1268173 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1600080 17230085 ~ 17241027 (-)
G185295 NA other upstream 1622262 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 1665496 17295501 ~ 17300782 (-)

Expression


Co-expression Network