Gene
RNA
| Item | Value |
|---|---|
| gene id | rps3a |
| gene name | rps3a,LOC107695588 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035917.1 |
| NCBI id | CM008320.1 |
| chromosome length | 21661149 |
| location | 16180070 ~ 16184812 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| rps3a | Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytosol. Is expressed in lens. Orthologous to human RPS3A (ribosomal protein S3A). |
| description |
|---|
| 40S ribosomal protein S3a |
| id | name | namespace |
|---|---|---|
| GO:0002181 | cytoplasmic translation | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02984 | RP-S3Ae, RPS3A; small subunit ribosomal protein S3Ae |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_007230241.2 | True | 906 | mRNA | 0.51 | 6 | 16180070 | 16184812 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| fam160a1 | fam160a1 | coding | downstream | 38800 | 16119674 ~ 16141270 (-) |
| dctpp1 | dctpp1 | coding | downstream | 83750 | 16095030 ~ 16096320 (-) |
| gpr75 | gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 | coding | downstream | 412290 | 15763186 ~ 15767780 (-) |
| pds5a | pds5a,LOC107757607 | coding | downstream | 472530 | 15684816 ~ 15707540 (-) |
| ugdh | ugdh,LOC107757604 | coding | downstream | 520504 | 15645138 ~ 15659566 (-) |
| mab21l2 | mab21l2 | coding | upstream | 166762 | 16351574 ~ 16356009 (-) |
| trnaw-cca_46 | NA | coding | upstream | 392011 | 16576823 ~ 16576895 (-) |
| trnar-ucg_6 | NA | coding | upstream | 392113 | 16576925 ~ 16576997 (-) |
| trnar-ccg_7 | NA | coding | upstream | 392216 | 16577028 ~ 16577100 (-) |
| trnar-ucu_5 | NA | coding | upstream | 392318 | 16577130 ~ 16577202 (-) |
| G184902 | gatb | non-coding | downstream | 81578 | 16097011 ~ 16098492 (-) |
| LOC111195239 | NA | non-coding | downstream | 86794 | 15992016 ~ 16093276 (-) |
| G184898 | NA | non-coding | downstream | 165544 | 16014017 ~ 16014526 (-) |
| LOC111195237 | NA | non-coding | downstream | 213657 | 15941098 ~ 15966413 (-) |
| G184881 | NA | non-coding | downstream | 233612 | 15891780 ~ 15946458 (-) |
| LOC111195238 | NA | non-coding | upstream | 269073 | 16453885 ~ 16462187 (-) |
| G184939 | NA | non-coding | upstream | 277866 | 16462678 ~ 16468266 (-) |
| G184944 | NA | non-coding | upstream | 309735 | 16494547 ~ 16541739 (-) |
| G184945 | NA | non-coding | upstream | 309918 | 16494730 ~ 16511182 (-) |
| G184946 | NA | non-coding | upstream | 313547 | 16498359 ~ 16501566 (-) |
| smim14 | smim14 | other | downstream | 508116 | 15666111 ~ 15671954 (-) |
| smim18 | smim18 | other | downstream | 798862 | 15376658 ~ 15381208 (-) |
| LOC103043525 | tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 | other | downstream | 839490 | 15309509 ~ 15340580 (-) |
| trnas-gcu_6 | NA | other | downstream | 2088480 | 14091509 ~ 14091590 (-) |
| trnas-gcu_5 | NA | other | downstream | 2090283 | 14089706 ~ 14089787 (-) |
| lrat | lrat | other | upstream | 713366 | 16898178 ~ 16901684 (-) |
| LOC103032582 | NA | other | upstream | 1045273 | 17230085 ~ 17241027 (-) |
| G185295 | NA | other | upstream | 1067455 | 17252267 ~ 17254633 (-) |
| G185311 | emc4 | other | upstream | 1110689 | 17295501 ~ 17300782 (-) |
| nutm1 | NA | other | upstream | 1128558 | 17313370 ~ 17328889 (-) |
