sfrp2 (sfrp2)


Basic Information

Item Value
gene id sfrp2
gene name sfrp2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17118052 ~ 17124751 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230273.3
ACCGGCCGGACTGTCAAACCGCGTGCAGCTGCTCCTCCAACCCTGACCATGCGCGCGCTCCTCTCCCTgacgctgctgccgctgctggtgctggtgcacGCCGGCGTCCACGCGCTGCACGTGTTCGACCAGCCGGGTCTGTTCAGCACGCGGAGCCAGTGCAAGCCCATCCCGCCCGCGCTGCACCTGTGCCACGAGATCGAGTACGCGGAGATGCGCCTGCCCAACCTGCTGGGGCACGAGGCCATGAGCGAGGTGCTGCAGCAGGCCGCCTCCTGGGTGCCGCTCGTGCAGAAGCGCTGCCACCCGGACACGCGCAAGTTCCTGTGCTCGCTCTTCGCGCCCGTCTGCCTGCCCGACGTGGACGAGCCCATCCGGCCGTGCCGCTCGCTCTGCGAGGCCGTGCGGCACGGGTGCGCGCCCGTCATGGCCGCTTTCGGCTTCCCGTGGCCGGAGATGCTGCGGTGCTCGCGCTTTCCGCCCGATGACGACCTGTGCATCCCCGCGGGGGACAACGGAGAGCGCGCGACCGCGGCGAACGAGACAGTACCAAAGGTCTGCGATGCCTGCAAAGAGAAGATTGAAGACGACAGTGAGATGGTGGACAGCCTTTGCAAGAACGATTTTGCTCTGAAGATTAAGGTGAAGGAGATTACCTACATGAACGGCGACACCAAGATCATCCCGGAGACCAAGAGCAAGACCATATACAAGCTGAACGGCGTCACCGAGCGAGACCTGAGGAAGACGGCGCTGCTGCTAAAGGACGGACTGCAGTGCTCGTGTGAGGAGATGAACGACATCAACTCCGCCTACCTGGTGATGGGCCAGAAGCAGGACGGGAACCTGGTCATCACGTCGCTGAAGCGCTGGCAGAAGGGCCAGAGAGAGTTCAAGCGGATctcccgcagcatccgcaagaTGCAGTGCTGAGGACGGACGCCGTGGTTCTCCGGGATATCTCCAGAAACCTCAGCGCTTGGCCTCGCCACTGCAGAACATGACTAATAAAGCGTTGGTctgcatttaaaaacacagattaaGGTTAAGTGTGGGCTGCGAGGGATTTGTCAACAAGGGCACATTTTAGAGCCATGTGGCTTTTTTCTGGGCAGAGGTAGACGTAGCTTAGCTTTTGCCCAGAAACATACCTCATGGTTTTTGAAATATTGTCCCAAAAACACAGTGTTGTAGAGTTTAGCTAATGTACCATATTTCTGTCTTCTAGGCTTCTAACAGCATCATTATCACTTTCCCACAGTAGACTGACTCAGATTGTCCCACTACCATACTAAACCATATGGTCTCAACAGTAActaaaaatgccaaaaatggTTCCAATCATCATAGATCCCTAAAGAACCTTCCCAGTGGACAGCTCTTTAAACATACTTgtaaatgagataaaaaagccATTGTAAAGAacctatataatatttataacagtataaataaaggttttacaGCAGTTACAGGCTTTCCAAGAACGTTTTACAGACTGGTTACAAACATCCCCTGCTGTCATAAAGGTGTTATAGCTTCTTTTTTGGTGCaactaactatatatataaatgtgttaaagGTTTGAGAGGTGTGCTAGTGAAGAACCAATCAGTGGATTTCGctttaattggaaaaaaaataaaaaaattagatgTAACAAGTGTTAAAACAAAATGTCCAAATAACTCTGCCCTTTTTATTGATGTGTGAATTGTTGAACTTTAAAGTTCAGCGCTGTGAGTTGCACGGAAAGtgtcagcaaaaaaaacatacattagcAGAGAACCTTAACTTTATGTGAAGCTTCTTTAAGCCTAGTGTGCAAAAATGGTTTTCTAAAGAACCAGAAACTGAACCAGCAGTGGTTTAAGGGTTCTTCCTAAAACCTTATATATTGGTACTCTTTAAACCTACACAGTTCTTCATACAATTAGgaaagtttatttaaagaaccAGCTGTAGTTTATGGGTTCTTTCCAAATTTCCTCCAATTCTTCAAATTTTAAGATCTAAGTTCTTCATCCTTGCATATCTCATTTACAGCATTGTTTACCCTGAAATCTTTACATTAAATGGGTAAACTTGAAACCTTTAAACCAAAAACGGTGCTATAAAGAACCATTCATTGAAAGGTCTTTAAGAAACCAACTGTAGTTTAAGGGTTCCTCCCTTTACATGATATGAAATTTCTTTAAACaggtctttaaaaaaacatctccatTAAAAGGATCCTATCTTAATGTAACAAAGTTTAAGGGTTCTTACCAGATATTCCCAAGCCGTGGAGGTTCTTTAGACCTGAAGAAGGTTCTATATATTCAgaggtttacaaaaaaagattattaCTGGATCCACATTACATGGTAATCTCATTTACACAAATATttctctagaaaaaaaaacatcctcctAAAAGGGTTTTAGCAAACCAAATTAGTTTAAGGATTCTTCCTGGAACCTTTATAATACATTGCAGTTCTTTAAACTCTAAACAATTCTTTACACTTATATTACATTCATAAAAAGGTTCTCCATATAACGTTTCTTTAGGTAACCTACAGTATTTTAGGGGTTCTTCACAAATATTTCTGAGATGTGGAGCTTCTTTAAACATTTAGGCAGTAAATGTACTTTGTGTGCTGAAAGAGGTTCCTTGAGGTATGTTGAGGAGTGCACAGTTGAAGGTGCTCCAGGTCGGTTCTGCGTGGTCTGCATGGTTTGTTTGGAGGAGCATTAATGAGCGTGTTTTTGCGAGTGTGCTTTTTTATAAATCCTTTTTATCGGCGCAGTGAGAGATAGCTGGCTATATTCTCAGTGTTTAAACCATGTAAGTGTGACTTTGAGAGTTTGCGTGAAAACGTTCCCCCCCTTTTCCCTGGGATTAAAGTGAGAAAAGAATGTTGGTTAGATCCAAAAGTGCATGAATTTGAttcaatataattaaatatatatatttttttcttctgtgtttttgcCTTCTCTGTACTTGAGCCTTAATGCTGCACTGTTTTCATGCAATATCCTTCAAACCGCAATCAGTGATCATCAGATTTCAGCGCGTTTCCTGTCTCTGTCAGTTGTAATACTGCTTTTATACAATGTAGGTCTGGGTTTCATTACATTTTCACGGTTTTATGCTGTGGTTCCTGAGAATTCATCATATTTAGAGTGGAGTCACACAGTATTAAAACCTCAAAATCATTCTGGTACATAGTTGAAACTGTACTTACCCCATTTTATAGCGACAAAGTTTATTAAAGCGGACCCCTGTCAGACCCCTTTTTTACGACACTCTGTAAATAGTCCAGTAAGATGTTTATTCTTGTACATAGATTTGGAGCAGTGATTCAAAAGTCTGTACCAATTTTGTGCTCCAAAGCTTCAATAATTACAATGACGTTGTCCTGTTGGTCTTACTATGACATGGGCACGTTTTCTTTCATGCACTGCTATGTTATGTGATTTTATAATGCTTTAATTTGTATGGTGATGCAGACGTTTCACACACGAGTCAATAAATAAAGTGAACACAAAGTG

Function

symbol description
sfrp2 Predicted to enable Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway; negative regulation of canonical Wnt signaling pathway; and non-canonical Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway and cell differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including adaxial cell; axis; musculature system; sensory system; and solid lens vesicle. Orthologous to human SFRP2 (secreted frizzled related protein 2).

NR:

description
PREDICTED: secreted frizzled-related protein 2

GO: NA

KEGG:

id description
K02176 SFRP2; secreted frizzled-related protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230273.3 True 3540 mRNA 0.44 3 17118052 17124751

Neighbor

gene id symbol gene type direction distance location
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding downstream 4913 17089154 ~ 17113139 (-)
fhdc1 fhdc1 coding downstream 58390 17042875 ~ 17059662 (-)
npy2r npy2r,LOC107700264 coding downstream 243571 16871017 ~ 16874481 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding downstream 290698 16804577 ~ 16827354 (-)
gucy1b3 gucy1b3,LOC107714654,LOC107757623 coding downstream 319304 16765427 ~ 16798748 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 305211 17429962 ~ 17501430 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 481354 17606105 ~ 17652838 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding upstream 538600 17663351 ~ 17675440 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding upstream 584100 17708851 ~ 17737741 (-)
LOC103045226 NA coding upstream 643629 17768380 ~ 17772217 (-)
G185079 NA non-coding downstream 85660 17032131 ~ 17032392 (-)
G185073 NA non-coding downstream 148288 16966009 ~ 16969764 (-)
G185041 fgg,LOC106602564 non-coding downstream 195558 16921036 ~ 16922494 (-)
G185033 NA non-coding downstream 253846 16857391 ~ 16864206 (-)
G185027 NA non-coding downstream 285275 16832466 ~ 16832777 (-)
G185280 NA non-coding upstream 79990 17204741 ~ 17216109 (-)
G185328 NA non-coding upstream 232677 17357428 ~ 17360299 (-)
LOC111195245 NA non-coding upstream 246001 17370752 ~ 17429772 (-)
G185317 supt16h,LOC106577942 non-coding upstream 267120 17391871 ~ 17393833 (-)
G185318 supt16h non-coding upstream 270502 17395253 ~ 17397947 (-)
lrat lrat other downstream 216368 16898178 ~ 16901684 (-)
smim14 smim14 other downstream 1446098 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1736844 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1777472 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 3026462 14091509 ~ 14091590 (-)
LOC103032582 NA other upstream 105334 17230085 ~ 17241027 (-)
G185295 NA other upstream 127516 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 170750 17295501 ~ 17300782 (-)
nutm1 NA other upstream 188619 17313370 ~ 17328889 (-)
G185321 NA other upstream 205267 17330018 ~ 17331954 (-)

Expression


Co-expression Network