LOC103023299


Basic Information

Item Value
gene id LOC103023299
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17986269 ~ 17990384 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231246.3
tgtctGCTGCTTCTCTCCTTTATCTCCCCCTCTGCTGCCTCACTCCCTCTATCAGTTGCCTCTACCCCATCAGATCTGTACATGAAACACGAGATTACTATCTACTTCTACAGAAAGCACGAGTGTTTGCGGTTCTGACCGCACTCTTAATAACCCGCCCACCATCACCTCCAACATCAAACTTACGTTCAACCCTTGTTCTGCAGGCAGTCCTGCGAGAACGTCCTGTACTGCATCTCCCATCACACTGAAGATACAGCTGCTTATGCCCATCACCCATCACCATGCCTGAAACTCCTCCTCCTGATGATTCTAATGGTGCTGGAATCACAGCCACTTTCTTCATCGTTGTCAGTCTGGTGGTGAGCTTGCTGCCTCTCCTGTGGTGCCTCCGCAGTCTGTATATGATCTACAAGAGCGGGGGTCGCAAGCTGATCTTCATCACCGTCCTCCTCATCAACGTCCTCGTTTATTTCTTCTTTAGTCCGGCTGCGATACGGCTCTATCTGAAGCTAGACTTCTCAGATGACTGTGTAAGAGGGTTCAAACTGTTTCTGATGGCTCAGCTCAGTGGGATCTTCCTGCACCAGctggtggcgctagagagcgTACTGTCTCTGAGGAACCCGCTCTACACCACAGACCTCTTCTCCATGCCGtgttcaatctctctctccgtcGCTCTCTACGTCTTTGCCATTGCTGGTGTTTGTAGTGAACATTGGCTGAACCTTACATCAGACTCTTACGTTGGCGCACAGTCTTACACTGGTGCGCAGTCTGACTTTGGAGAACTGTTTTCTTTGCTATCACAGCCTAACTCTAGCCAACAGTCTGACTTTGGTAAAGTGTCTACCTCGTTTTCACATGCTAATTCTAGCGTTAAGTCTAAAATTGACCTACAATCTGACGTTGGTAAGCTGTTTTCCTTGCTTTCCCAGGCTAACTCCAGCCAAAAGTCTAACACTGGACAAAAGTCGAACTTTGCTAAACTGTTTTCCTTGTTTTCGAAGGCTAATTCCAACCAAAAGTCTAAATTTAGTAAATTGTTTTCCTTGTTTTCACGACCTAACTCCAGCCAACACTCCAACATTGGTAACCTGTTAATGTCTGAACATTTCACACAGTTTTTGTCTATATCTCATGTAACGTTGTACTCTAAGTTTGGCGCATTGTTCATTTTTGATTTTGGCGCTTTGTTTGCATTCTGTCTTCTCTCCGtcctaatattaatactaacaGTCGTTTTCACCTTTAAAGCTCCGCCTTCTCCACCCTCTgacccagacacacacaaaaaaacaacatactgGATTCTGGCTATTGCCACCGTCACAATGGTTGTCGCCTATTTGCCCTTTTTGTTGGCTCTTTTTATCATACGCTGCAAACCCAGATCTGGCTTTGAATCAGAACCTCGTACAGAGGAAGAACGAGCAGCTTTAGCACGGGCAGCGGCTTCACACGCAGCTGCTTTTGTAACGACCTCCTCTCTGATGAGTTTCAGATTATTCTCCGACGCATTCCTGTGTAGACTTGTCTTCAAGAAGGTTCTCCCGGTTCTGCAGAAACAGAGACCTGACTTATCTGAGAACTCTGGAGGGGTTGTATAATCATCCTCAGCAGATTCTGACACTCAATACATTTTGAGAGTTGAGTAATACAAGATAAttctgttggtccattcatcatgaaattcttttttttccccatttcctCCCCAATTTAAAAGGccaattacatattaatattccaacaccaggaaggtgaagagtAGTACATGCctcttccgatacatgtgaagtcggactccacctctttttaaactgctgcggATGTAGCACTGTAGCATTGTACTCGtttctgatacaacagctcacagatacgcagccttgtgctgatccacatcaccctacgAGTGCTGAGGGAAAAAGCGCCATctgctgtacccacccagagagagcaagaccaaatgtgctctctcagggctccaacagctgatggcaagcaacataaacaggattcgaacctaaaatctgaaataaaaatctgatacAATATGGAAGAACAACTATTCTTATTAACTTGTTAGTGTCAGGGCAACAAAAATGCTCCTTTTGCCTCaagattttattgatttaaaaagatttctgaaatttctgcttgttttataGTCCTGTCCTGCAatctactttttatttaaatttacatttgaaTACAATACTCTTATCACACTTTAAAATATGTGTTCTATTGAGCTTGACTAATACTATTTACTCTGAAAAAGATAAAGGTACAACTAAGGGTTCGTAATAGAGCAAGGCCTTCGATTAAACACTTTTCTCTAACCTGCGGACCACAGCCAAAGGTTTAAAAGCAAGTAAATTCACTTAGTGTCCATATTATATCAGAGACCTTACAAATATGGAGAAAAGTCAATGACCACTGTATGAATGGGAGTTCTCCTAACACTAATCATGGCACCGGTTCTAGGACAAAGCCCTGCCCTAAGGCAAAAacaaccaatcagcttgctgcttgtGCTAAGAGTAAAGGAGAGTGCACCTGCTGGCAGGCCCGTTCCTTCGCTGTGGAGATCTGCACAGGCGCAGTAGCCataaaaagttgaaaaatgaGCTTTTTTGTGCGTTACTGAGTCAAAAGCTTTAaactattcataaagttttggtCAGATTTTATTCGtagtataaaaaatgtttctgaAATAGTAATCCAACTTCCTCTATTTAAACAGATGGAAAGCCGGTGTTGCATGACTGGAAATTTTGCAAAAATGGCCGCTAAGTGAACTGGCTTTCCTATTAAGACTTATATCTACTTATACAAGACTAGGCTTCAATCTGTGTGAAAGGGGAGTGACCCAAATACTCTAAACTTAGGGCCTAGTTACCATGtcaacaacatattttaaatcactgataaaatctggCCAATAaaactcatcattattattttgtagTGTTTGGCTCTTGTAAATACGTTGTATAAAAAGATATTGTTGGCTGTCTCTCTTTGTTAATATCTAATGTGACTATATAAAggtactataataataaaaatttacTATACTTTTGATGATGATACAATGTCAGTGTAATGCTCTTATTAAATCAATTTGTGATTGATTGAGGCTTTATCATTGCCtaaaaaatgtatgattagaatagcactgctgaggtaaatgtaatgtgatttGCTGGATGGTCTGACACGATCTTAAGCATTCAATAAAATCAATTATAATCATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231246.3 True 3270 mRNA 0.41 2 17986269 17990384

Neighbor

gene id symbol gene type direction distance location
LOC111195249 NA coding downstream 8313 17976113 ~ 17977956 (-)
LOC103031415 LOC108442772,LOC107570622,LOC106951372,LOC102787328,LOC103153163,LOC103472754 coding downstream 48681 17895563 ~ 17937588 (-)
LOC103024551 LOC108442773 coding downstream 109886 17854554 ~ 17876383 (-)
LOC103024247 NA coding downstream 138341 17843428 ~ 17847928 (-)
LOC103031730 LOC108442776 coding downstream 203629 17775259 ~ 17782640 (-)
polr1e NA coding upstream 75305 18065689 ~ 18071638 (-)
map3k4 map3k4,LOC107739870,LOC107705416 coding upstream 208066 18198450 ~ 18231271 (-)
LOC103028955 LOC108415761 coding upstream 357883 18348267 ~ 18357795 (-)
tarbp1 LOC108416131 coding upstream 367495 18357879 ~ 18390033 (-)
LOC103046077 LOC108415085 coding upstream 403819 18394203 ~ 18419920 (-)
G185393 NA non-coding downstream 94004 17889373 ~ 17892265 (-)
G185389 NA non-coding downstream 105182 17807087 ~ 17881087 (-)
G185378 NA non-coding downstream 161238 17783867 ~ 17825031 (-)
G185380 NA non-coding downstream 212087 17773654 ~ 17774182 (-)
G185386 NA non-coding downstream 221898 17762950 ~ 17764371 (-)
G185428 LOC103022477,LOC108434314,LOC108260671 non-coding upstream 5715 17996099 ~ 17997259 (-)
G185402 smc2,LOC107746033,LOC107702366,LOC107656012,LOC107551560 non-coding upstream 17357 18007741 ~ 18009805 (-)
LOC103047599 NA non-coding upstream 124657 18115041 ~ 18125528 (-)
G185445 NA non-coding upstream 142125 18132509 ~ 18141223 (-)
G185444 NA non-coding upstream 145421 18135805 ~ 18148838 (-)
G185321 NA other downstream 654315 17330018 ~ 17331954 (-)
nutm1 NA other downstream 657380 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 685487 17295501 ~ 17300782 (-)
G185295 NA other downstream 731636 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 745242 17230085 ~ 17241027 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 28338 18018722 ~ 18050369 (-)
apela NA other upstream 32738 18023122 ~ 18097691 (-)
G185890 LOC108443824 other upstream 1957698 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2127042 20117426 ~ 20127092 (-)
G185943 NA other upstream 2580805 20571189 ~ 20627262 (-)

Expression


Co-expression Network