gucy1a3 (gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251)


Basic Information

Item Value
gene id gucy1a3
gene name gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16804577 ~ 16827354 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232721.3
gtgtgtgtgtggaggactCGGTGTAAGGAGGTTCTCTGTGTgaataaaactctttaaaacacgcgattatttctttatttttatataaatgtaatatatatttttttatctttttcccTAATATGAGCCAAAAATGTCTTCCCGCCGAAATGGAGTCAGGAATGCCCTCTAGCCGTGGACGCTGAGAGGCTGTAGCCGCTGAAGGATGTTCTGCGCCCGGCTGAAGGATCTGAAGATCTCGGGAGAATGCCCCTTCTCCGTGCTGGTCCGGAGCGAGGAGCCGGGGGAGGACGGAGCGCTGTCCGGGTCCGGAGAGGGACAGCCGGGCAGCGTGGAGAGCGAGGAGCCGCTGTCCGTCTCCAGGCGCAAGACAAGCCGGGGCAAAGTTAACCTGCACTCGCTGGGGGAGAGCGTGCGGAAACTGATCTGTCCGGAGtttgaaAAGCTGAGGAATGCTATGATACGAGTGATGAAGCAGGATTCAGGTCTGACCTGTCCTGCAGGAAACCACACAGAACGTCTTGGCCAGATGCTGGAGAAACCTGAACATCTGCATGATGTCATGAAGCTATATTCGCAGAAAACAGGTATCCCCATGGACACGCTAAAGATCTCCTTGGGCTTGGAGGTGTTCAGAGACTGTTACGAGGAGGACAGTCACATTCTGGGCGTGGTCGGAGGTGCGCTCCACGACTTCCTCAACAGCTTCAACGTCCTCTTAAAGCAGAGCACGCCCCCCACGGCCGAAGCCCTGCAGTACGTGAGCCGAGCCTCCGTGCTGTGCTTGGATAAAGACCCCGGACTGCTGACGGTTTACTACTTCAACCCCCACCCCACCGCTGAGCTCTTCTTCCCCGGGATCGTCCAGGCCGCCGCCAGGTTCCTCTACCGCACGCAGGTGGAGGTGAGGATGGACTTCGCCGGGGCCAAGGACAGCGGCGCCCTTCAGGCCAGCCACCAGCCCCACCTGCTGTACTCGGTGGCGGTGAGGGACGCCAGGAGCCTGACGCCGAGCCCCATGAGGACGCACTCGTCCGGAGACATCCCCCTCTCGCTGCTCTACACCACCTTCCCCTTCCACATCCTCCTGGACCAGGACATGGTGCTGCTGCAGATAGGGGACGGACTGAGGAAGCGTTTGGGGCGCAGCAGAGACGGACAGAGGCGGCCCACCTTCGAGGAGCACTTCTCCATCGTCCTGCCCGAGATCAGGGCCAACTTCCAGGGCATCCTCACCATGCTGAACACCCAGTTCATCCTGCgggtgaagcagcagcagccctcCAGCTCCACAGCCAGCTATGGAAAGCACATGGACCTGAAGGGCCAGATGATCTTCATGTCTGAGATGAACGCCGTTCTGTTCCTGGGCTCTCCGTGTGTAGATAAGCTGGAGGAGCTGACGGGGCGTGGCCTCTACCTGTCCGATATCCCCATTCACAACGCCCTGAGGGACGTGGTGCTGGTGGGCGAGCAGGCCAAGGCTCAGGACGGCCTGAAGAAGCGCCTGGGCAAGGCCAAGGCCGCCCTGGAGAACGCCCACCAGGccctggaggaggagaagaggagaacCGTGGAGCTCCTGTTCACCATCTTCCCCGGGAACGTGGCTCAGCGCCTGTGGCAGGGGCTTCCTGTGCAGGCCAAGAAATTCGAGGGCGTGACGGTGCTGTTCTCCGACATCGTGGGCTTCACGGCCATCTGCTCGCGCTGCACGCCCATGCAGGTGGTGAACATGCTGAGCGAGCTGTACACCCGATTCGACGGCCACTGCGGAGAGCTGGACGTCTACAAGGTGGAAACGATTGGAGATGCGTACTGTGTCGCAGGAGGTCTCCATAAAGAGAGCCCGACCCACGCTGTGCAGATCGCTCTCATGGCCCTAAAGATGATGGAGCTGTCCGACGAGGTCACCACCCCCATGGGGGAGGTCATTAGGATGCGTATTGGGATCCACTCTGGCTCGGTTCTGGCGGGCGTGGTCGGTGTGAAGATGCCCCGGTATTGTCTGTTCGGCAACAACGTCACTTTAGCCAACAAGTTTGAGTCATGTAGCGTCCCGAGGAAGATCAACATCAGCCCAACCACCTACAGGCTGCTGAAAGATCGTCCCGAGTTCACATTCATCCCGCGCTCCAGAGAGGAACTTCCGCCCAACTTCCCCTCCGACATCCCTGGCATCTGTTACTTCCTGGAGGCGTCGGATCGGAGGCCGAGCGCGGCTCGCAGAGACTCCGCAGCAGAAACATAAATaacgcctctctctctctctccagtgaCGGCGGTGCAGGGGGCCGAGCGCGAGAGCGCACGCGAGAGTGCACGCGTCCCGCGCTCAGCCAGACGTAGCAAAGTTATTCAGCAATAGGTCAAGTTGCCAAAAAGTGtccaaaagagaaaaacagcttATTtaaccgggggggg

Function

NR:

description
LOW QUALITY PROTEIN: guanylate cyclase soluble subunit alpha-3

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0004383 guanylate cyclase activity molecular_function

KEGG:

id description
K12318 GUCY1A; guanylate cyclase soluble subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232721.3 True 2424 mRNA 0.59 9 16804577 16827354

Neighbor

gene id symbol gene type direction distance location
gucy1b3 gucy1b3,LOC107714654,LOC107757623 coding downstream 5829 16765427 ~ 16798748 (-)
fabp2 fabp2,LOC108434304,LOC107714631,LOC107572697,LOC107700317,LOC107695844 coding downstream 47678 16750652 ~ 16756899 (-)
trnar-ccu_39 NA coding downstream 161846 16642659 ~ 16642731 (-)
trnaq-uug_3 NA coding downstream 161974 16642531 ~ 16642603 (-)
trnar-ucg_17 NA coding downstream 162332 16642173 ~ 16642245 (-)
npy2r npy2r,LOC107700264 coding upstream 43663 16871017 ~ 16874481 (-)
fhdc1 fhdc1 coding upstream 215521 17042875 ~ 17059662 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding upstream 261800 17089154 ~ 17113139 (-)
sfrp2 sfrp2 coding upstream 290698 17118052 ~ 17124751 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 602608 17429962 ~ 17501430 (-)
G184993 NA non-coding downstream 101084 16647410 ~ 16703493 (-)
G185012 myoz2,LOC107695402,LOC103360806,LOC102203409,LOC100711322 non-coding downstream 103269 16699724 ~ 16701308 (-)
G185000 NA non-coding downstream 122720 16677975 ~ 16681857 (-)
G184998 NA non-coding downstream 129568 16674125 ~ 16675009 (-)
G184996 NA non-coding downstream 146985 16655797 ~ 16657592 (-)
G185027 NA non-coding upstream 5112 16832466 ~ 16832777 (-)
G185033 NA non-coding upstream 30037 16857391 ~ 16864206 (-)
G185041 fgg,LOC106602564 non-coding upstream 93682 16921036 ~ 16922494 (-)
G185073 NA non-coding upstream 138655 16966009 ~ 16969764 (-)
G185079 NA non-coding upstream 204777 17032131 ~ 17032392 (-)
smim14 smim14 other downstream 1132623 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1423369 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1463997 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2712987 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 2714790 14089706 ~ 14089787 (-)
lrat lrat other upstream 70824 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 402731 17230085 ~ 17241027 (-)
G185295 NA other upstream 424913 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 468147 17295501 ~ 17300782 (-)
nutm1 NA other upstream 486016 17313370 ~ 17328889 (-)

Expression


Co-expression Network